java.lang.Object
- java.lang.Enum<GOEvidenceCode>
- - ubic.gemma.model.association.GOEvidenceCode

All Implemented Interfaces:

Serializable, Comparable<GOEvidenceCode>
```
public enum GOEvidenceCode
extends Enum<GOEvidenceCode>
```
This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database)
- IED = Inferred from experimental data
- IAGP = Inferred from association of genotype and phenotype
- IPM = Inferred from phenotype manipulation
- QTM = Quantitative Trait Measurement
And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.

Enum Constant Summary

Enum Constants
Enum Constant	Description
`EXP`
`HDA`	Inferred from High Throughput Direct Assay (HDA)
`HEP`	Inferred from High Throughput Expression Pattern (HEP)
`HGI`	Inferred from High Throughput Genetic Interaction (HGI)
`HMP`	Inferred from High Throughput Mutant Phenotype (HMP)
`HTP`	Inferred from High Throughput Experiment (HTP)
`IAGP`	Inferred from association of genotype and phenotype (RGD code)
`IBA`	A type of phylogenetic evidence whereby an aspect of a descendant is inferred through the characterization of an aspect of a ancestral gene.
`IBD`	A type of phylogenetic evidence whereby an aspect of an ancestral gene is inferred through the characterization of an aspect of a descendant gene.
`IC`
`IDA`
`IEA`
`IED`	Inferred from experimental data (RGD code)
`IEP`
`IGC`	Inferred from Genomic Context; This evidence code can be used whenever information about the genomic context of a gene product forms part of the evidence for a particular annotation.
`IGI`
`IIA`	Added by Gemma: Inferred from Imported Annotation.
`IKR`	A type of phylogenetic evidence characterized by the loss of key sequence residues.
`IMP`
`IMR`	Inferred from Missing Residues.
`IPI`
`IPM`	Inferred from phenotype manipulation (RGD code)
`IRD`	Inferred from Rapid Divergence.
`ISA`
`ISM`
`ISO`
`ISS`
`NAS`
`ND`
`NR`
`OTHER`	Unsupported/unknown GO evidence code are mapped to this value.
`QTM`	Quantitative Trait Measurement (RGD code)
`RCA`
`TAS`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static GOEvidenceCode`	`valueOf(String name)`	Returns the enum constant of this type with the specified name.
`static GOEvidenceCode[]`	`values()`	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - IC
```
public static final GOEvidenceCode IC
```
  - IDA
```
public static final GOEvidenceCode IDA
```
  - IEA
```
public static final GOEvidenceCode IEA
```
  - IEP
```
public static final GOEvidenceCode IEP
```
  - IGI
```
public static final GOEvidenceCode IGI
```
  - IMP
```
public static final GOEvidenceCode IMP
```
  - IPI
```
public static final GOEvidenceCode IPI
```
  - ISS
```
public static final GOEvidenceCode ISS
```
  - NAS
```
public static final GOEvidenceCode NAS
```
  - ND
```
public static final GOEvidenceCode ND
```
  - RCA
```
public static final GOEvidenceCode RCA
```
  - TAS
```
public static final GOEvidenceCode TAS
```
  - NR
```
public static final GOEvidenceCode NR
```
  - EXP
```
public static final GOEvidenceCode EXP
```
  - ISA
```
public static final GOEvidenceCode ISA
```
  - ISM
```
public static final GOEvidenceCode ISM
```
  - IGC
```
public static final GOEvidenceCode IGC
```
    Inferred from Genomic Context; This evidence code can be used whenever information about the genomic context of a gene product forms part of the evidence for a particular annotation. Genomic context includes, but is not limited to, such things as identity of the genes neighboring the gene product in question (i.e. synteny), operon structure, and phylogenetic or other whole genome analysis. "We recommend making an entry in the with/from column when using this evidence code. In cases where operon structure or synteny are the compelling evidence, include identifier(s) for the neighboring genes in the with/from column. In casees where metabolic reconstruction is the compelling evidence, and there is an identifier for the pathway or system, that should be entered in the with/from column. When multiple entries are placed in the with/from field, they are separated by pipes."
  - ISO
```
public static final GOEvidenceCode ISO
```
  - IIA
```
public static final GOEvidenceCode IIA
```
    Added by Gemma: Inferred from Imported Annotation. To be distinguished from IEA or IC, represents annotations that were present in imported data, and which have unknown evidence in the original source (though generally put there manually).
  - IBA
```
public static final GOEvidenceCode IBA
```
    A type of phylogenetic evidence whereby an aspect of a descendant is inferred through the characterization of an aspect of a ancestral gene.
  - IBD
```
public static final GOEvidenceCode IBD
```
    A type of phylogenetic evidence whereby an aspect of an ancestral gene is inferred through the characterization of an aspect of a descendant gene.
  - IKR
```
public static final GOEvidenceCode IKR
```
    A type of phylogenetic evidence characterized by the loss of key sequence residues. Annotating with this evidence codes implies a NOT annotation. This evidence code is also referred to as IMR (inferred from Missing Residues).
  - IRD
```
public static final GOEvidenceCode IRD
```
    Inferred from Rapid Divergence. A type of phylogenetic evidence characterized by rapid divergence from ancestral sequence. Annotating with this evidence codes implies a NOT annotation.
  - IMR
```
public static final GOEvidenceCode IMR
```
    Inferred from Missing Residues. Represents a NOT association. IMR is a synonym of IKR.
  - IED
```
public static final GOEvidenceCode IED
```
    Inferred from experimental data (RGD code)
  - IAGP
```
public static final GOEvidenceCode IAGP
```
    Inferred from association of genotype and phenotype (RGD code)
  - IPM
```
public static final GOEvidenceCode IPM
```
    Inferred from phenotype manipulation (RGD code)
  - QTM
```
public static final GOEvidenceCode QTM
```
    Quantitative Trait Measurement (RGD code)
  - HDA
```
public static final GOEvidenceCode HDA
```
    Inferred from High Throughput Direct Assay (HDA)
  - HEP
```
public static final GOEvidenceCode HEP
```
    Inferred from High Throughput Expression Pattern (HEP)
  - HGI
```
public static final GOEvidenceCode HGI
```
    Inferred from High Throughput Genetic Interaction (HGI)
  - HMP
```
public static final GOEvidenceCode HMP
```
    Inferred from High Throughput Mutant Phenotype (HMP)
  - HTP
```
public static final GOEvidenceCode HTP
```
    Inferred from High Throughput Experiment (HTP)
  - OTHER
```
public static final GOEvidenceCode OTHER
```
    Unsupported/unknown GO evidence code are mapped to this value.
- Method Detail
  - values
```
public static GOEvidenceCode[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
    for (GOEvidenceCode c : GOEvidenceCode.values()) System.out.println(c);
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static GOEvidenceCode valueOf(String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    IllegalArgumentException - if this enum type has no constant with the specified name
    
    NullPointerException - if the argument is null

Enum GOEvidenceCode

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

IC

IDA

IEA

IEP

IGI

IMP

IPI

ISS

NAS

ND

RCA

TAS

NR

EXP

ISA

ISM

IGC

ISO

IIA

IBA

IBD

IKR

IRD

IMR

IED

IAGP

IPM

QTM

HDA

HEP

HGI

HMP

HTP

OTHER

Method Detail

values

valueOf