Hierarchy For All Packages

Package Hierarchies:

• ubic.gemma.rest,
• ubic.gemma.rest.analytics,
• ubic.gemma.rest.analytics.ga4,
• ubic.gemma.rest.annotations,
• ubic.gemma.rest.providers,
• ubic.gemma.rest.security,
• ubic.gemma.rest.servlet,
• ubic.gemma.rest.swagger.resolver,
• ubic.gemma.rest.util,
• ubic.gemma.rest.util.args

Class Hierarchy

• java.lang.Object
  • ubic.gemma.rest.util.args.AbstractArg<T> (implements ubic.gemma.rest.util.args.Arg<T>)
    • ubic.gemma.rest.util.args.AbstractArrayArg<T>
      • ubic.gemma.rest.util.args.AbstractEntityArrayArg<O,S> (implements ubic.gemma.rest.util.args.Arg<T>)
        • ubic.gemma.rest.util.args.CompositeSequenceArrayArg
        • ubic.gemma.rest.util.args.DatabaseEntryArrayArg
        • ubic.gemma.rest.util.args.DatasetArrayArg
        • ubic.gemma.rest.util.args.FactorValueArrayArg
        • ubic.gemma.rest.util.args.GeneArrayArg
        • ubic.gemma.rest.util.args.PlatformArrayArg
        • ubic.gemma.rest.util.args.TaxonArrayArg
      • ubic.gemma.rest.util.args.ExcludeArg<T>
      • ubic.gemma.rest.util.args.StringArrayArg
    • ubic.gemma.rest.util.args.AbstractEntityArg<T,O,S> (implements ubic.gemma.rest.util.args.Arg<T>)
      • ubic.gemma.rest.util.args.CompositeSequenceArg<T>
        • ubic.gemma.rest.util.args.CompositeSequenceIdArg
        • ubic.gemma.rest.util.args.CompositeSequenceNameArg
      • ubic.gemma.rest.util.args.DatabaseEntryArg<T>
        • ubic.gemma.rest.util.args.DatabaseEntryIdArg
        • ubic.gemma.rest.util.args.DatabaseEntryStringArg
      • ubic.gemma.rest.util.args.DatasetArg<T>
        • ubic.gemma.rest.util.args.DatasetIdArg
        • ubic.gemma.rest.util.args.DatasetStringArg
      • ubic.gemma.rest.util.args.ExpressionAnalysisResultSetArg
      • ubic.gemma.rest.util.args.FactorValueArg<A>
        • ubic.gemma.rest.util.args.FactorValueIdArg
        • ubic.gemma.rest.util.args.FactorValueValueArg
      • ubic.gemma.rest.util.args.GeneArg<T>
        • ubic.gemma.rest.util.args.GeneAnyIdArg<T>
          • ubic.gemma.rest.util.args.GeneEnsemblIdArg
          • ubic.gemma.rest.util.args.GeneNcbiIdArg
        • ubic.gemma.rest.util.args.GeneSymbolArg
      • ubic.gemma.rest.util.args.PlatformArg<T>
        • ubic.gemma.rest.util.args.PlatformIdArg
        • ubic.gemma.rest.util.args.PlatformStringArg
      • ubic.gemma.rest.util.args.QuantitationTypeArg<T>
        • ubic.gemma.rest.util.args.QuantitationTypeByIdArg
        • ubic.gemma.rest.util.args.QuantitationTypeByNameArg
      • ubic.gemma.rest.util.args.TaxonArg<T>
        • ubic.gemma.rest.util.args.TaxonIdArg
        • ubic.gemma.rest.util.args.TaxonNameArg
        • ubic.gemma.rest.util.args.TaxonNcbiIdArg
    • ubic.gemma.rest.util.args.ExpLevelConsolidationArg
    • ubic.gemma.rest.util.args.FilterArg<O>
    • ubic.gemma.rest.util.args.LimitArg
    • ubic.gemma.rest.util.args.OffsetArg
    • ubic.gemma.rest.util.args.SortArg<O>
  • ubic.gemma.rest.util.args.AbstractEntityArgService<T,S> (implements ubic.gemma.rest.util.args.EntityArgService<T,S>)
    • ubic.gemma.rest.util.args.CompositeSequenceArgService
    • ubic.gemma.rest.util.args.DatabaseEntryArgService
    • ubic.gemma.rest.util.args.DatasetArgService
    • ubic.gemma.rest.util.args.ExpressionAnalysisResultSetArgService
    • ubic.gemma.rest.util.args.GeneArgService
    • ubic.gemma.rest.util.args.PlatformArgService
    • ubic.gemma.rest.util.args.TaxonArgService
  • ubic.gemma.rest.providers.AbstractExceptionMapper<E> (implements javax.ws.rs.ext.ExceptionMapper<E>)
    • ubic.gemma.rest.providers.AccessDeniedExceptionMapper
    • ubic.gemma.rest.providers.AuthenticationExceptionMapper
    • ubic.gemma.rest.providers.EntityNotFoundExceptionMapper
    • ubic.gemma.rest.providers.MalformedArgExceptionMapper
    • ubic.gemma.rest.providers.NotFoundExceptionMapper
    • ubic.gemma.rest.providers.UnhandledExceptionMapper
    • ubic.gemma.rest.providers.WebApplicationExceptionMapper
  • io.swagger.v3.core.jackson.AbstractModelConverter (implements io.swagger.v3.core.converter.ModelConverter)
    • io.swagger.v3.core.jackson.ModelResolver (implements io.swagger.v3.core.converter.ModelConverter)
      • ubic.gemma.rest.swagger.resolver.CustomModelResolver
  • ubic.gemma.rest.AnalysisResultSetsWebService
  • ubic.gemma.rest.providers.AnalyticsApplicationEventListener (implements org.glassfish.jersey.server.monitoring.ApplicationEventListener)
  • ubic.gemma.rest.providers.AnalyticsRequestEventListener (implements org.glassfish.jersey.server.monitoring.RequestEventListener)
  • ubic.gemma.rest.AnnotationsWebService
  • ubic.gemma.rest.AnnotationsWebService.AnnotationSearchResultValueObject
  • ubic.gemma.rest.util.ArgUtils
  • ubic.gemma.rest.analytics.ga4.AuthenticationBasedUserIdRetrievalStrategy (implements ubic.gemma.rest.analytics.ga4.UserIdRetrievalStrategy)
  • ubic.gemma.rest.providers.CacheControlHeaderDecorator (implements javax.ws.rs.ext.WriterInterceptor)
  • ubic.gemma.rest.analytics.ga4.CompositeClientIdRetrievalStrategy (implements ubic.gemma.rest.analytics.ga4.ClientIdRetrievalStrategy)
  • ubic.gemma.rest.swagger.resolver.CustomModelResolverRegistrationListener (implements javax.servlet.ServletContextListener)
  • ubic.gemma.rest.DatasetsWebService
  • ubic.gemma.rest.DatasetsWebService.CategoryWithUsageStatisticsValueObject (implements ubic.gemma.rest.DatasetsWebService.UsageStatistics)
  • ubic.gemma.rest.DatasetsWebService.OntologyTermValueObject
  • ubic.gemma.rest.util.ExceptionMapperUtils
  • ubic.gemma.rest.util.args.FilterArg.Filter
  • ubic.gemma.rest.util.args.FilterArgBaseListener (implements ubic.gemma.rest.util.args.FilterArgListener)
  • org.springframework.web.filter.GenericFilterBean (implements org.springframework.beans.factory.BeanNameAware, org.springframework.beans.factory.DisposableBean, org.springframework.context.EnvironmentAware, javax.servlet.Filter, org.springframework.beans.factory.InitializingBean, org.springframework.web.context.ServletContextAware)
    • org.springframework.web.filter.OncePerRequestFilter
      • ubic.gemma.rest.servlet.CorsFilter
      • ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilter
  • ubic.gemma.rest.GeneWebService
  • ubic.gemma.rest.analytics.ga4.GoogleAnalytics4Provider (implements ubic.gemma.rest.analytics.AnalyticsProvider, org.springframework.beans.factory.DisposableBean, org.springframework.beans.factory.InitializingBean)
  • ubic.gemma.rest.providers.GzipHeaderDecorator (implements javax.ws.rs.ext.WriterInterceptor)
  • ubic.gemma.model.IdentifiableValueObject<O> (implements ubic.gemma.model.common.Identifiable, java.io.Serializable)
    • ubic.gemma.model.common.auditAndSecurity.curation.AbstractCuratableValueObject<C>
      • ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject (implements ubic.gemma.model.common.description.Versioned)
        • ubic.gemma.rest.DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject (implements ubic.gemma.rest.DatasetsWebService.UsageStatistics)
      • ubic.gemma.model.expression.experiment.ExpressionExperimentValueObject (implements gemma.gsec.model.SecureValueObject)
        • ubic.gemma.rest.DatasetsWebService.ExpressionExperimentWithSearchResultValueObject
    • ubic.gemma.model.common.description.AnnotationValueObject
      • ubic.gemma.rest.DatasetsWebService.AnnotationWithUsageStatisticsValueObject (implements ubic.gemma.rest.DatasetsWebService.UsageStatistics)
    • ubic.gemma.model.genome.TaxonValueObject
      • ubic.gemma.rest.DatasetsWebService.TaxonWithUsageStatisticsValueObject (implements ubic.gemma.rest.DatasetsWebService.UsageStatistics)
  • ubic.gemma.rest.util.JacksonConfig
  • ubic.gemma.rest.providers.JsonMappingExceptionMapper (implements javax.ws.rs.ext.ExceptionMapper<E>)
  • ubic.gemma.rest.util.MediaTypeUtils
  • ubic.gemma.rest.providers.MetricsApplicationEventListener (implements org.glassfish.jersey.server.monitoring.ApplicationEventListener)
  • ubic.gemma.rest.providers.ObjectMapperResolver (implements javax.ws.rs.ext.ContextResolver<T>)
  • ubic.gemma.rest.util.OpenApiUtils
  • ubic.gemma.rest.PhenotypeWebService
  • ubic.gemma.rest.PlatformsWebService
  • org.antlr.v4.runtime.Recognizer<Symbol,ATNInterpreter>
    • org.antlr.v4.runtime.Lexer (implements org.antlr.v4.runtime.TokenSource)
      • ubic.gemma.rest.util.args.FilterArgLexer
    • org.antlr.v4.runtime.Parser
      • ubic.gemma.rest.util.args.FilterArgParser
  • ubic.gemma.rest.analytics.ga4.RequestAttributesBasedClientIdRetrievalStrategy (implements ubic.gemma.rest.analytics.ga4.ClientIdRetrievalStrategy)
  • ubic.gemma.rest.providers.RequestExceptionEventListener (implements org.glassfish.jersey.server.monitoring.ApplicationEventListener)
  • ubic.gemma.rest.providers.RequestExceptionLogger (implements org.glassfish.jersey.server.monitoring.RequestEventListener)
  • ubic.gemma.rest.analytics.ga4.RequestHeaderBasedClientIdRetrievalStrategy (implements ubic.gemma.rest.analytics.ga4.ClientIdRetrievalStrategy)
  • ubic.gemma.rest.util.Responder
  • ubic.gemma.rest.util.ResponseDataObject<T>
    • ubic.gemma.rest.util.FilteredAndPaginatedResponseDataObject<T>
    • ubic.gemma.rest.util.FilteredResponseDataObject<T>
    • ubic.gemma.rest.util.GroupedResponseDataObject<T>
    • ubic.gemma.rest.util.LimitedResponseDataObject<T>
    • ubic.gemma.rest.util.PaginatedResponseDataObject<T>
    • ubic.gemma.rest.util.QueriedAndFilteredAndPaginatedResponseDataObject<T>
    • ubic.gemma.rest.SearchWebService.SearchResultsResponseDataObject
  • ubic.gemma.rest.util.ResponseErrorObject
  • ubic.gemma.rest.security.RestAuthEntryPoint (implements org.springframework.security.web.AuthenticationEntryPoint, org.springframework.web.context.ServletConfigAware)
  • ubic.gemma.rest.RootWebService
  • ubic.gemma.rest.RootWebService.ApiInfoValueObject
  • ubic.gemma.rest.RootWebService.UserValueObject
  • org.antlr.v4.runtime.RuleContext (implements org.antlr.v4.runtime.tree.RuleNode)
    • org.antlr.v4.runtime.ParserRuleContext
      • ubic.gemma.rest.util.args.FilterArgParser.ClauseContext
      • ubic.gemma.rest.util.args.FilterArgParser.CollectionContext
      • ubic.gemma.rest.util.args.FilterArgParser.CollectionOperatorContext
      • ubic.gemma.rest.util.args.FilterArgParser.DisjunctionContext
      • ubic.gemma.rest.util.args.FilterArgParser.FilterContext
      • ubic.gemma.rest.util.args.FilterArgParser.OperatorContext
      • ubic.gemma.rest.util.args.FilterArgParser.ScalarContext
      • ubic.gemma.rest.util.args.FilterArgParser.SubClauseContext
  • ubic.gemma.rest.SearchWebService
  • ubic.gemma.rest.SearchWebService.SearchResultValueObject<T>
  • ubic.gemma.rest.SearchWebService.SearchSettingsValueObject
  • ubic.gemma.rest.util.ServletUtils
  • ubic.gemma.rest.util.args.SortArg.Sort
  • ubic.gemma.rest.util.SortValueObject
  • ubic.gemma.rest.TaxaWebService
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • ubic.gemma.rest.util.EntityNotFoundException
      • java.lang.RuntimeException
        • javax.ws.rs.WebApplicationException
          • javax.ws.rs.ClientErrorException
            • javax.ws.rs.BadRequestException
              • ubic.gemma.rest.util.MalformedArgException
  • ubic.gemma.rest.util.WellComposedErrorBody

Interface Hierarchy

• ubic.gemma.rest.analytics.AnalyticsProvider
• ubic.gemma.rest.util.args.Arg<T>
• ubic.gemma.rest.analytics.ga4.ClientIdRetrievalStrategy
• ubic.gemma.rest.DatasetsWebService.UsageStatistics
• ubic.gemma.rest.util.args.EntityArgService<T,S>
• org.antlr.v4.runtime.tree.ParseTreeListener
  • ubic.gemma.rest.util.args.FilterArgListener
• ubic.gemma.rest.util.Responder.FilterMethod<T>
• ubic.gemma.rest.analytics.ga4.UserIdRetrievalStrategy

Annotation Type Hierarchy

• ubic.gemma.rest.annotations.CacheControl (implements java.lang.annotation.Annotation)
• ubic.gemma.rest.annotations.CacheControls (implements java.lang.annotation.Annotation)
• ubic.gemma.rest.annotations.GZIP (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • ubic.gemma.rest.util.args.SortArg.Sort.Direction