Uses of Class
ubic.gemma.web.services.rest.util.ResponseDataObject

Packages that use ResponseDataObject

Package	Description
ubic.gemma.web.services.rest
ubic.gemma.web.services.rest.util

Uses of ResponseDataObject in ubic.gemma.web.services.rest

Subclasses of ResponseDataObject in ubic.gemma.web.services.rest

Modifier and Type	Class and Description
static class	SearchWebService.SearchResultsResponseDataObject

Methods in ubic.gemma.web.services.rest that return ResponseDataObject

Modifier and Type	Method and Description
ResponseDataObject<Set<GeneEvidenceValueObject>>	TaxaWebService.findCandidateGenesInTaxon(TaxonArg<?> taxonArg, StringArrayArg phenotypes, BoolArg editableOnly) Given a set of phenotypes, return all genes associated with them.
ResponseDataObject<RootWebService.ApiInfoValueObject>	RootWebService.getApiInfo(javax.servlet.http.HttpServletRequest request, javax.servlet.ServletConfig servletConfig) Returns an object with API information.
ResponseDataObject<Set<AnnotationValueObject>>	DatasetsWebService.getDatasetAnnotations(DatasetArg<?> datasetArg) Retrieves the annotations for the given dataset.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetDifferentialExpression(DatasetArrayArg datasets, LongArg diffExSet, DoubleArg threshold, LimitArg limit, BoolArg keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of genes highly expressed in the given component on given datasets.
ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>>	DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg, OffsetArg offset, LimitArg limit) Retrieves the differential analysis results for the given dataset.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetExpressionForGenes(DatasetArrayArg datasets, GeneArrayArg genes, BoolArg keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of given genes on given datasets.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetExpressionPca(DatasetArrayArg datasets, IntArg component, LimitArg limit, BoolArg keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of genes highly expressed in the given component on given datasets.
ResponseDataObject<Boolean>	DatasetsWebService.getDatasetHasBatch(DatasetArg<?> datasetArg) Returns true if the experiment has had batch information successfully filled in.
ResponseDataObject<List<ArrayDesignValueObject>>	DatasetsWebService.getDatasetPlatforms(DatasetArg<?> datasetArg) Retrieves platforms for the given dataset.
ResponseDataObject<Set<QuantitationTypeValueObject>>	DatasetsWebService.getDatasetQuantitationTypes(DatasetArg<?> datasetArg) Retrieve all available quantitation types for a dataset.
ResponseDataObject<List<BioAssayValueObject>>	DatasetsWebService.getDatasetSamples(DatasetArg<?> datasetArg) Retrieves the samples for the given dataset.
ResponseDataObject<ubic.gemma.web.services.rest.DatasetsWebService.SimpleSVDValueObject>	DatasetsWebService.getDatasetSvd(DatasetArg<?> datasetArg) Retrieves the design for the given dataset.
ResponseDataObject<List<GeneEvidenceValueObject>>	GeneWebService.getGeneEvidence(GeneArg<?> geneArg) Retrieves gene evidence for the given gene.
ResponseDataObject<List<CoexpressionValueObjectExt>>	GeneWebService.getGeneGeneCoexpression(GeneArg<?> geneArg, GeneArg<?> with, LimitArg limit, IntArg stringency) Retrieves the coexpression of two given genes.
ResponseDataObject<List<GeneOntologyTermValueObject>>	GeneWebService.getGeneGoTerms(GeneArg<?> geneArg) Retrieves the GO terms of the given gene.
ResponseDataObject<List<PhysicalLocationValueObject>>	GeneWebService.getGeneLocations(GeneArg<?> geneArg) Retrieves the physical location of the given gene.
ResponseDataObject<List<PhysicalLocationValueObject>>	TaxaWebService.getGeneLocationsInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg) Retrieves gene location for the gene on the given taxon.
ResponseDataObject<List<GeneValueObject>>	GeneWebService.getGenes(GeneArrayArg genes) Retrieves all genes matching the identifier.
ResponseDataObject<List<GeneEvidenceValueObject>>	TaxaWebService.getGenesEvidenceInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg) Retrieves gene evidence for the gene on the given taxon.
ResponseDataObject<Set<DumpsValueObject>>	PhenotypeWebService.getPhenotypeDumps() Finds all dumps.
ResponseDataObject<Set<EvidenceValueObject<? extends PhenotypeAssociation>>>	PhenotypeWebService.getPhenotypeEvidence(StringArg database, OffsetArg offset, LimitArg limit) Finds all evidence with the given external database name.
ResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject>	AnalysisResultSetsWebService.getResultSet(ExpressionAnalysisResultSetArg analysisResultSet, Boolean excludeResults) Retrieve a AnalysisResultSet given its identifier.
ResponseDataObject<List<TaxonValueObject>>	TaxaWebService.getTaxa() Lists all available taxa.
ResponseDataObject<List<TaxonValueObject>>	TaxaWebService.getTaxaByIds(TaxonArrayArg taxaArg) Retrieves single taxon based on the given identifier.
ResponseDataObject<List<GeneValueObject>>	TaxaWebService.getTaxonGenes(TaxonArg<?> taxonArg, GeneArg<?> geneArg) Retrieves genes matching the identifier on the given taxon.
ResponseDataObject<List<GeneValueObject>>	TaxaWebService.getTaxonGenesOverlappingChromosome(TaxonArg<?> taxonArg, String chromosomeName, String strand, LongArg start, IntArg size) Finds genes overlapping a given region.
ResponseDataObject<Collection<?>>	TaxaWebService.getTaxonPhenotypes(TaxonArg<?> taxonArg, BoolArg editableOnly, BoolArg tree) Loads all phenotypes for the given taxon.
ResponseDataObject<UserValueObject>	RootWebService.getUser(String username) Retrieve user information.
ResponseDataObject<List<ubic.gemma.web.services.rest.AnnotationsWebService.AnnotationSearchResultValueObject>>	AnnotationsWebService.searchAnnotations(StringArrayArg query) Does a search for annotation tags based on the given string.
ResponseDataObject<List<ubic.gemma.web.services.rest.AnnotationsWebService.AnnotationSearchResultValueObject>>	AnnotationsWebService.searchAnnotationsByPathQuery(StringArrayArg query)

Uses of ResponseDataObject in ubic.gemma.web.services.rest.util

Subclasses of ResponseDataObject in ubic.gemma.web.services.rest.util

Modifier and Type	Class and Description
class	PaginatedResponseDataObject<T>

Methods in ubic.gemma.web.services.rest.util that return ResponseDataObject

Modifier and Type	Method and Description
static <T> ResponseDataObject<T>	Responder.respond(T payload) Produce a ResponseDataObject that wraps the given argument.