ubic.gemma.persistence.service.expression.biomaterial

Interface BioMaterialDao

All Superinterfaces:

BaseDao<BioMaterial>, BaseVoEnabledDao<BioMaterial,BioMaterialValueObject>

All Known Implementing Classes:

BioMaterialDaoImpl

public interface BioMaterialDao
extends BaseVoEnabledDao<BioMaterial,BioMaterialValueObject>

See Also:

BioMaterial

Method Summary

Modifier and Type	Method and Description
BioMaterial	copy(BioMaterial bioMaterial)
Collection<BioMaterial>	findByExperiment(ExpressionExperiment experiment)
Collection<BioMaterial>	findByFactorValue(FactorValue fv)
ExpressionExperiment	getExpressionExperiment(Long bioMaterialId)
void	thaw(BioMaterial bioMaterial)
Collection<BioMaterial>	thaw(Collection<BioMaterial> bioMaterials)

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, remove, remove, remove, removeAll, save, save, update, update

Method Detail

copy

BioMaterial copy(BioMaterial bioMaterial)

findByExperiment

Collection<BioMaterial> findByExperiment(ExpressionExperiment experiment)

findByFactorValue

Collection<BioMaterial> findByFactorValue(FactorValue fv)

getExpressionExperiment

ExpressionExperiment getExpressionExperiment(Long bioMaterialId)

Parameters:

bioMaterialId - biomaterial id

Returns:

the experiment the biomaterial appears in

thaw

void thaw(BioMaterial bioMaterial)

thaw

Collection<BioMaterial> thaw(Collection<BioMaterial> bioMaterials)