ubic.gemma.core.tasks.maintenance

Class IndexerTaskImpl

java.lang.Object

ubic.gemma.core.tasks.AbstractTask<IndexerResult,IndexerTaskCommand>

ubic.gemma.core.tasks.maintenance.IndexerTaskImpl

All Implemented Interfaces:

Callable<IndexerResult>, IndexerTask, Task<IndexerResult,IndexerTaskCommand>

@Component
 @Scope(value="prototype")
public class IndexerTaskImpl
extends AbstractTask<IndexerResult,IndexerTaskCommand>
implements IndexerTask

NOTE do not set this up to run on a remote worker. The search index directory may not be accessible.

Author:

klc

Field Summary

Fields inherited from class ubic.gemma.core.tasks.AbstractTask

taskCommand

Constructor Summary

Constructors

Constructor and Description
IndexerTaskImpl()

Method Summary

Modifier and Type	Method and Description
IndexerResult	call()
void	setArrayGps(org.compass.gps.impl.SingleCompassGps arrayGps)
void	setBibliographicGps(org.compass.gps.impl.SingleCompassGps bibliographicGps)
void	setBiosequenceGps(org.compass.gps.impl.SingleCompassGps biosequenceGps)
void	setCompassArray(org.compass.core.spi.InternalCompass compassArray)
void	setCompassBibliographic(org.compass.core.spi.InternalCompass compassBibliographic)
void	setCompassBiosequence(org.compass.core.spi.InternalCompass compassBiosequence)
void	setCompassExperimentSet(org.compass.core.spi.InternalCompass compassExperimentSet)
void	setCompassExpression(org.compass.core.spi.InternalCompass compassExpression)
void	setCompassGene(org.compass.core.spi.InternalCompass compassGene)
void	setCompassGeneSet(org.compass.core.spi.InternalCompass compassGeneSet)
void	setCompassProbe(org.compass.core.spi.InternalCompass compassProbe)
void	setExperimentSetGps(org.compass.gps.impl.SingleCompassGps experimentSetGps)
void	setExpressionGps(org.compass.gps.impl.SingleCompassGps expressionGps)
void	setGeneGps(org.compass.gps.impl.SingleCompassGps geneGps)
void	setGeneSetGps(org.compass.gps.impl.SingleCompassGps geneSetGps)
void	setMailEngine(MailEngine mailEngine)
void	setProbeGps(org.compass.gps.impl.SingleCompassGps probeGps)

Methods inherited from class ubic.gemma.core.tasks.AbstractTask

getTaskCommand, setTaskCommand

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.tasks.Task

getTaskCommand, setTaskCommand

Constructor Detail

IndexerTaskImpl

public IndexerTaskImpl()

Method Detail

call

public IndexerResult call()

Specified by:

call in interface Callable<IndexerResult>

setArrayGps

public void setArrayGps(org.compass.gps.impl.SingleCompassGps arrayGps)

Parameters:

arrayGps - the arrayGps to set

setBibliographicGps

public void setBibliographicGps(org.compass.gps.impl.SingleCompassGps bibliographicGps)

Parameters:

bibliographicGps - the bibliographicGps to set

setBiosequenceGps

public void setBiosequenceGps(org.compass.gps.impl.SingleCompassGps biosequenceGps)

Parameters:

biosequenceGps - the bioSequenceGps to set

setCompassArray

public void setCompassArray(org.compass.core.spi.InternalCompass compassArray)

Parameters:

compassArray - the compassArray to set

setCompassBibliographic

public void setCompassBibliographic(org.compass.core.spi.InternalCompass compassBibliographic)

Parameters:

compassBibliographic - the compassBibliographic to set

setCompassBiosequence

public void setCompassBiosequence(org.compass.core.spi.InternalCompass compassBiosequence)

Parameters:

compassBiosequence - the compassBiosequence to set

setCompassExperimentSet

public void setCompassExperimentSet(org.compass.core.spi.InternalCompass compassExperimentSet)

Parameters:

compassExperimentSet - the compassExperimentSet to set

setCompassExpression

public void setCompassExpression(org.compass.core.spi.InternalCompass compassExpression)

Parameters:

compassExpression - the compassExpression to set

setCompassGene

public void setCompassGene(org.compass.core.spi.InternalCompass compassGene)

Parameters:

compassGene - the compassGene to set

setCompassGeneSet

public void setCompassGeneSet(org.compass.core.spi.InternalCompass compassGeneSet)

Parameters:

compassGeneSet - the compassGeneSet to set

setCompassProbe

public void setCompassProbe(org.compass.core.spi.InternalCompass compassProbe)

Parameters:

compassProbe - the compassProbe to set

setExperimentSetGps

public void setExperimentSetGps(org.compass.gps.impl.SingleCompassGps experimentSetGps)

Parameters:

experimentSetGps - the experimentSetGps to set

setExpressionGps

public void setExpressionGps(org.compass.gps.impl.SingleCompassGps expressionGps)

Parameters:

expressionGps - the expressionGps to set

setGeneGps

public void setGeneGps(org.compass.gps.impl.SingleCompassGps geneGps)

Parameters:

geneGps - the geneGps to set

setGeneSetGps

public void setGeneSetGps(org.compass.gps.impl.SingleCompassGps geneSetGps)

Parameters:

geneSetGps - the geneSetGps to set

setMailEngine

public void setMailEngine(MailEngine mailEngine)

setProbeGps

public void setProbeGps(org.compass.gps.impl.SingleCompassGps probeGps)

Parameters:

probeGps - the probeGps to set