ubic.gemma.persistence.service.genome.sequenceAnalysis

Interface AnnotationAssociationService

All Superinterfaces:

BaseReadOnlyService<AnnotationAssociation>, BaseService<AnnotationAssociation>

All Known Implementing Classes:

AnnotationAssociationServiceImpl

public interface AnnotationAssociationService
extends BaseService<AnnotationAssociation>

Author:

paul

Method Summary

Modifier and Type	Method and Description
AnnotationAssociation	create(AnnotationAssociation annotationAssociation) Creates the given entity in the persistent storage.
Collection<AnnotationAssociation>	find(BioSequence bioSequence)
Collection<AnnotationAssociation>	find(Gene gene)
void	remove(AnnotationAssociation annotationAssociation) Removes the given entity from the persistent storage.
void	remove(Collection<AnnotationAssociation> anCollection) Removes all the given entities from persistent storage.
Collection<AnnotationValueObject>	removeRootTerms(Collection<AnnotationValueObject> associations)
void	update(AnnotationAssociation annotationAssociation) Updates the given entity in the persistent storage.
void	update(Collection<AnnotationAssociation> anCollection) Updates all entities in the given collection in the persistent storage.

Methods inherited from interface ubic.gemma.persistence.service.BaseService

create, findOrCreate, remove, removeAllInBatch, save, save

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService.BaseReadOnlyService

countAll, find, findOrFail, load, load, loadAll, loadOrFail

Method Detail

create

@Secured(value="GROUP_USER")
AnnotationAssociation create(AnnotationAssociation annotationAssociation)

Description copied from interface: BaseService

Creates the given entity in the persistent storage.

Specified by:

create in interface BaseService<AnnotationAssociation>

Parameters:

annotationAssociation - the entity to be created.

Returns:

object referencing the persistent instance of the given entity.

remove

@Secured(value="GROUP_USER")
void remove(Collection<AnnotationAssociation> anCollection)

Description copied from interface: BaseService

Removes all the given entities from persistent storage.

Specified by:

remove in interface BaseService<AnnotationAssociation>

Parameters:

anCollection - the entities to be removed.

remove

@Secured(value="GROUP_USER")
void remove(AnnotationAssociation annotationAssociation)

Description copied from interface: BaseService

Removes the given entity from the persistent storage.

Specified by:

remove in interface BaseService<AnnotationAssociation>

Parameters:

annotationAssociation - the entity to be removed.

update

@Secured(value="GROUP_USER")
void update(Collection<AnnotationAssociation> anCollection)

Description copied from interface: BaseService

Updates all entities in the given collection in the persistent storage.

Specified by:

update in interface BaseService<AnnotationAssociation>

Parameters:

anCollection - the entities to be updated.

update

@Secured(value="GROUP_USER")
void update(AnnotationAssociation annotationAssociation)

Description copied from interface: BaseService

Updates the given entity in the persistent storage.

Specified by:

update in interface BaseService<AnnotationAssociation>

Parameters:

annotationAssociation - the entity to be updated.

find

Collection<AnnotationAssociation> find(BioSequence bioSequence)

find

Collection<AnnotationAssociation> find(Gene gene)

removeRootTerms

Collection<AnnotationValueObject> removeRootTerms(Collection<AnnotationValueObject> associations)