BibliographicReference (Gemma 1.29.12 API)

java.lang.Object
- ubic.gemma.model.common.AbstractDescribable
- - ubic.gemma.model.common.description.BibliographicReference

All Implemented Interfaces:: Serializable, Describable, Identifiable

public class BibliographicReference
extends AbstractDescribable
implements Serializable

See Also:: Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class BibliographicReference.Factory

Nested Classes
Modifier and Type	Class and Description
`static class`	`BibliographicReference.Factory`

Constructor Summary

Constructors
Constructor and Description

BibliographicReference()

Constructors
Constructor and Description
`BibliographicReference()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getAbstractText()`
`String`	`getAnnotatedAbstract()`
`Set<Characteristic>`	`getAnnotations()`
`String`	`getAuthorList()`
`Set<Compound>`	`getChemicals()`
`String`	`getCitation()`
`String`	`getEditor()`
`String`	`getFullTextUri()`
`String`	`getIssue()`
`Set<Keyword>`	`getKeywords()`
`Set<MedicalSubjectHeading>`	`getMeshTerms()`
`String`	`getPages()`
`DatabaseEntry`	`getPubAccession()`
`String`	`getPublication()`
`Date`	`getPublicationDate()`
`String`	`getPublisher()`
`Boolean`	`getRetracted()`
`String`	`getTitle()`
`String`	`getVolume()`
`void`	`setAbstractText(String abstractText)`
`void`	`setAnnotatedAbstract(String annotatedAbstract)`
`void`	`setAnnotations(Set<Characteristic> annotations)`
`void`	`setAuthorList(String authorList)`
`void`	`setChemicals(Set<Compound> chemicals)`
`void`	`setCitation(String citation)`
`void`	`setEditor(String editor)`
`void`	`setFullTextUri(String fullTextUri)`
`void`	`setIssue(String issue)`
`void`	`setKeywords(Set<Keyword> keywords)`
`void`	`setMeshTerms(Set<MedicalSubjectHeading> meshTerms)`
`void`	`setPages(String pages)`
`void`	`setPubAccession(DatabaseEntry pubAccession)`
`void`	`setPublication(String publication)`
`void`	`setPublicationDate(Date publicationDate)`
`void`	`setPublisher(String publisher)`
`void`	`setRetracted(Boolean retracted)`
`void`	`setTitle(String title)`
`void`	`setVolume(String volume)`

Methods inherited from class ubic.gemma.model.common.AbstractDescribable
equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail
- BibliographicReference
```
public BibliographicReference()
```

Method Detail

getAbstractText
```
public String getAbstractText()
```

setAbstractText

public void setAbstractText(String abstractText)

getAnnotatedAbstract
```
public String getAnnotatedAbstract()
```
Returns:

A version of the abstract with inserted markup (e.g., abbreviation expansions, part-of-speech)

setAnnotatedAbstract

public void setAnnotatedAbstract(String annotatedAbstract)

getAnnotations

public Set<Characteristic> getAnnotations()

setAnnotations

public void setAnnotations(Set<Characteristic> annotations)

getAuthorList
```
public String getAuthorList()
```

setAuthorList

public void setAuthorList(String authorList)

getChemicals
```
public Set<Compound> getChemicals()
```

setChemicals

public void setChemicals(Set<Compound> chemicals)

getCitation
```
public String getCitation()
```
Returns:

The citation as a pre-composed string

setCitation

public void setCitation(String citation)

getEditor
```
public String getEditor()
```

setEditor
```
public void setEditor(String editor)
```

getFullTextUri
```
public String getFullTextUri()
```
Returns:

URI of the full text on the publisher's web site.

setFullTextUri

public void setFullTextUri(String fullTextUri)

getIssue
```
public String getIssue()
```

setIssue
```
public void setIssue(String issue)
```

getKeywords
```
public Set<Keyword> getKeywords()
```

setKeywords

public void setKeywords(Set<Keyword> keywords)

getMeshTerms

public Set<MedicalSubjectHeading> getMeshTerms()

setMeshTerms

public void setMeshTerms(Set<MedicalSubjectHeading> meshTerms)

getPages
```
public String getPages()
```

setPages
```
public void setPages(String pages)
```

getPubAccession

public DatabaseEntry getPubAccession()

setPubAccession

public void setPubAccession(DatabaseEntry pubAccession)

getPublication
```
public String getPublication()
```

setPublication

public void setPublication(String publication)

getPublicationDate
```
public Date getPublicationDate()
```

setPublicationDate

public void setPublicationDate(Date publicationDate)

getPublisher
```
public String getPublisher()
```

setPublisher

public void setPublisher(String publisher)

getTitle
```
public String getTitle()
```

setTitle
```
public void setTitle(String title)
```

getVolume
```
public String getVolume()
```

setVolume
```
public void setVolume(String volume)
```

getRetracted
```
public Boolean getRetracted()
```
Returns:

true if article is recorded as retracted

setRetracted
```
public void setRetracted(Boolean retracted)
```
Parameters:

retracted - the retracted to set

Class BibliographicReference

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

Methods inherited from class java.lang.Object

Constructor Detail

BibliographicReference

Method Detail

getAbstractText

setAbstractText

getAnnotatedAbstract

setAnnotatedAbstract

getAnnotations

setAnnotations

getAuthorList

setAuthorList

getChemicals

setChemicals

getCitation

setCitation

getEditor

setEditor

getFullTextUri

setFullTextUri

getIssue

setIssue

getKeywords

setKeywords

getMeshTerms

setMeshTerms

getPages

setPages

getPubAccession

setPubAccession

getPublication

setPublication

getPublicationDate

setPublicationDate

getPublisher

setPublisher

getTitle

setTitle

getVolume

setVolume

getRetracted

setRetracted