Package ubic.gemma.model.genome.gene

Class GeneSet

java.lang.Object

ubic.gemma.model.common.Describable

ubic.gemma.model.common.AbstractAuditable

ubic.gemma.model.genome.gene.GeneSet

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredNotChild, Serializable, Auditable, Identifiable

public class GeneSet
extends AbstractAuditable
implements gemma.gsec.model.SecuredNotChild

A grouping of genes that share a common relationship

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	GeneSet.Factory

Constructor Summary

Constructors

Constructor	Description
GeneSet()

Method Summary

Modifier and Type	Method	Description
static GeneSetMember	containsGene(Gene g, GeneSet gs)
Set<Characteristic>	getCharacteristics()
Set<BibliographicReference>	getLiteratureSources()
Set<GeneSetMember>	getMembers()
DatabaseEntry	getSourceAccession()
void	setCharacteristics(Set<Characteristic> characteristics)
void	setLiteratureSources(Set<BibliographicReference> literatureSources)
void	setMembers(Set<GeneSetMember> members)
void	setSourceAccession(DatabaseEntry sourceAccession)

Methods inherited from class ubic.gemma.model.common.AbstractAuditable

getAuditTrail, setAuditTrail

Methods inherited from class ubic.gemma.model.common.Describable

equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Detail

GeneSet

public GeneSet()

Method Detail

containsGene

public static GeneSetMember containsGene(Gene g,
                                         GeneSet gs)

getCharacteristics

public Set<Characteristic> getCharacteristics()

setCharacteristics

public void setCharacteristics(Set<Characteristic> characteristics)

getLiteratureSources

public Set<BibliographicReference> getLiteratureSources()

setLiteratureSources

public void setLiteratureSources(Set<BibliographicReference> literatureSources)

getMembers

public Set<GeneSetMember> getMembers()

setMembers

public void setMembers(Set<GeneSetMember> members)

getSourceAccession

public DatabaseEntry getSourceAccession()

setSourceAccession

public void setSourceAccession(DatabaseEntry sourceAccession)