The following document contains the listing of user tags found in the code. Below is the summary of the occurrences per tag.
| Tag Class | Total number of occurrences | Tag strings used by tag class |
|---|---|---|
| @todo | 7 | @todo |
| TODO | 9 | TODO |
Each tag is detailed below:
Number of occurrences found in the code: 7
| ubic.basecode.dataStructure.graph.DirectedGraph | Line |
|---|---|
| do something about cyclicity; make this a dag or a subclass... | 46 |
| ubic.basecode.datafilter.RowAbsentFilter | Line |
| this should check more carefully - actually test that the rows are all the same. | 196 |
| ubic.basecode.math.DescriptiveWithMissing | Line |
| this will still break in some situations where there are missing values | 229 |
| possibly implement so a copy is not made. | 589 |
| possibly implement so a copy is not made. | 642 |
| ubic.basecode.math.MatrixRowStats | Line |
| Have min() and max() throw an EmptyMatrixException -- this exception class does not yet exist and needs to be defined somewhere. | 31 |
| ubic.basecode.math.Stats | Line |
| offer a regularized version of this function. | 104 |
Number of occurrences found in the code: 9
| ubic.basecode.dataStructure.matrix.AbstractDoubleMatrixTest | Line |
|---|---|
| Document Me | 31 |
| ubic.basecode.dataStructure.matrix.AbstractMatrix3D | Line |
| Document Me | 27 |
| ubic.basecode.dataStructure.matrix.DoubleMatrix3D | Line |
| Document Me | 24 |
| ubic.basecode.io.excel.CreateSpreadSheet | Line |
| Document Me | 28 |
| ubic.basecode.math.linearmodels.LeastSquaresFitTest | Line |
| R code please | 483 |
| add more tests here. | 1170 |
| ubic.basecode.math.linearmodels.ModeratedTstatTest | Line |
| Document Me | 39 |
| ubic.basecode.ontology.ncbo.OmimAnnotatorClient | Line |
| Document Me | 27 |
| ubic.basecode.util.StringUtil | Line |
| check for reserved words. https://stat.ethz.ch/R-manual/R-devel/library/base/html/Reserved.html | 203 |
