/*
    * The baseCode project
    *
    * Copyright (c) 2007-2019 University of British Columbia
    *
    * Licensed under the Apache License, Version 2.0 (the "License");
    * you may not use this file except in compliance with the License.
    * You may obtain a copy of the License at
    *
   *       http://www.apache.org/licenses/LICENSE-2.0
   *
   * Unless required by applicable law or agreed to in writing, software
   * distributed under the License is distributed on an "AS IS" BASIS,
   * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   * See the License for the specific language governing permissions and
   * limitations under the License.
   *
   */
  package ubic.basecode.ontology.jena;
  
  import com.hp.hpl.jena.enhanced.EnhGraph;
  import com.hp.hpl.jena.enhanced.GraphPersonality;
  import com.hp.hpl.jena.ontology.Individual;
  import com.hp.hpl.jena.ontology.OntClass;
  import com.hp.hpl.jena.ontology.Restriction;
  import com.hp.hpl.jena.ontology.impl.OntClassImpl;
  import com.hp.hpl.jena.rdf.model.Resource;
  import ubic.basecode.ontology.model.OntologyIndividual;
  import ubic.basecode.ontology.model.OntologyTerm;
  
  import java.util.Set;
  
  /**
   * @author pavlidis
   */
  class OntologyIndividualImpl extends AbstractOntologyResource implements OntologyIndividual {
  
      private final Individual ind;
      private final Set<Restriction> additionalRestrictions;
  
      public OntologyIndividualImpl( Individual ind, Set<Restriction> additionalRestrictions ) {
          super( ind );
          this.ind = ind;
          this.additionalRestrictions = additionalRestrictions;
      }
  
      @Override
      public OntologyTerm getInstanceOf() {
          Resource type = ind.getRDFType();
  
          OntClass cl;
          EnhGraph g = new EnhGraph( type.getModel().getGraph(), new GraphPersonality() );
          if ( OntClassImpl.factory.canWrap( type.asNode(), g ) ) {
              cl = new OntClassImpl( type.asNode(), g );
          } else {
              throw new IllegalStateException( "sorry, can't handle that of instance" );
          }
  
          return new OntologyTermImpl( cl, additionalRestrictions );
      }
  }