Package ubic.basecode.ontology.providers

Class ExperimentalFactorOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.providers.AbstractOntologyService

ubic.basecode.ontology.providers.AbstractBaseCodeOntologyService

ubic.basecode.ontology.providers.ExperimentalFactorOntologyService

All Implemented Interfaces:

OntologyService

public class ExperimentalFactorOntologyService
extends AbstractBaseCodeOntologyService

Experimental Factor Ontology

Author:

Paul

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
ExperimentalFactorOntologyService()

Method Summary

Modifier and Type	Method	Description
protected String	getOntologyUrl()	Defines the location of the ontology eg: MGED

Methods inherited from class ubic.basecode.ontology.providers.AbstractBaseCodeOntologyService

getCacheName, getOntologyName, isOntologyEnabled

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadModel, loadModelFromStream, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

ExperimentalFactorOntologyService

public ExperimentalFactorOntologyService()

Method Detail

getOntologyUrl

protected String getOntologyUrl()

Description copied from class: AbstractOntologyService

Defines the location of the ontology eg: MGED

Overrides:

getOntologyUrl in class AbstractBaseCodeOntologyService