Deprecated API

Contents

• Classes
• Methods
• Constructors

Classes

Class	Description
ubic.basecode.ontology.providers.DiseaseOntologyService	use MONDO instead
ubic.basecode.ontology.providers.FMAOntologyService	this ontology is inactive, use UBERON instead
ubic.basecode.ontology.providers.HumanDevelopmentOntologyService	this ontology was last updated in unmaintained since 2013
ubic.basecode.ontology.providers.MedicOntologyService
ubic.basecode.ontology.providers.NIFSTDOntologyService

Methods

Method	Description
ubic.basecode.ontology.model.OntologyTerm.getTerm()	use OntologyResource.getLabel() instead.
ubic.basecode.ontology.model.OntologyTerm.isTermObsolete()	use OntologyResource.isObsolete() instead
ubic.basecode.ontology.providers.OntologyService.loadTermsInNameSpace(InputStream, boolean)	use OntologyService.initialize(InputStream, boolean) instead and possibly OntologyService.cancelInitializationThread() prior to get any running initialization thread out of the way

Constructors

Constructor	Description
ubic.basecode.ontology.providers.GenericOntologyService(String, String, boolean)	use GenericOntologyService(String, String, String) with an explicit cache name instead