Tag List Report

The following document contains the listing of user tags found in the code. Below is the summary of the occurrences per tag.

Tag Class Total number of occurrences Tag strings used by tag class
@todo 7 @todo
TODO 9 TODO

Each tag is detailed below:

@todo

Number of occurrences found in the code: 7

ubic.basecode.dataStructure.graph.DirectedGraph Line
do something about cyclicity; make this a dag or a subclass... 46
ubic.basecode.datafilter.RowAbsentFilter Line
this should check more carefully - actually test that the rows are all the same. 196
ubic.basecode.math.DescriptiveWithMissing Line
this will still break in some situations where there are missing values 226
possibly implement so a copy is not made. 585
possibly implement so a copy is not made. 637
ubic.basecode.math.MatrixRowStats Line
Have min() and max() throw an EmptyMatrixException -- this exception class does not yet exist and needs to be defined somewhere. 31
ubic.basecode.math.Stats Line
offer a regularized version of this function. 104

TODO

Number of occurrences found in the code: 9

ubic.basecode.dataStructure.matrix.AbstractDoubleMatrixTest Line
Document Me 31
ubic.basecode.dataStructure.matrix.AbstractMatrix3D Line
Document Me 27
ubic.basecode.dataStructure.matrix.DoubleMatrix3D Line
Document Me 24
ubic.basecode.io.excel.CreateSpreadSheet Line
Document Me 28
ubic.basecode.math.linearmodels.LeastSquaresFitTest Line
R code please 469
add more tests here. 1156
ubic.basecode.math.linearmodels.ModeratedTstatTest Line
Document Me 39
ubic.basecode.ontology.ncbo.OmimAnnotatorClient Line
Document Me 27
ubic.basecode.util.StringUtil Line
check for reserved words. https://stat.ethz.ch/R-manual/R-devel/library/base/html/Reserved.html 203