RowMissingFilter (baseCode 1.1.21-SNAPSHOT API)

java.lang.Object
- ubic.basecode.datafilter.AbstractFilter<M,R,C,V>
- - ubic.basecode.datafilter.RowMissingFilter<M,R,C,V>

All Implemented Interfaces:

Filter<M,R,C,V>
```
public class RowMissingFilter<M extends Matrix2D<R,C,V>,R,C,V>
extends AbstractFilter<M,R,C,V>
```
Remove rows from a matrix that are missing too many points.

Author:

Paul Pavlidis

Field Summary
- Fields inherited from class ubic.basecode.datafilter.AbstractFilter
  log

Constructor Summary

Constructors
Constructor Description

RowMissingFilter()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`M`	`filter(M data)`	Filter the data
`void`	`setMaxFractionRemoved(double f)`	Set the maximum fraction of rows which will be removed from the data set.
`void`	`setMinPresentCount(int m)`	Set the minimum number of values that must be present in each row.
`void`	`setMinPresentFraction(double k)`

Methods inherited from class ubic.basecode.datafilter.AbstractFilter
getOutputMatrix

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - RowMissingFilter
```
public RowMissingFilter()
```
- Method Detail
  - filter
```
public M filter(M data)
```
    Description copied from interface: Filter
    
    Filter the data
    
    Parameters:
    
    data - a NamedMatrix. Some types of filters require that this be of a particular type of implementation of the Filter interface.
    
    Returns:
    
    The resulting filtered matrix
  - setMaxFractionRemoved
```
public void setMaxFractionRemoved(double f)
```
    Set the maximum fraction of rows which will be removed from the data set. The default value is 0.3 Set it to 1.0 to remove this restriction.
    
    Parameters:
    
    f - double
  - setMinPresentCount
```
public void setMinPresentCount(int m)
```
    Set the minimum number of values that must be present in each row. The default value is 5. This is always overridden by a hard-coded value (currently 2) that must be present for a row to be kept; but this value is in turn overridden by the maxfractionRemoved.
    
    Parameters:
    
    m - int
  - setMinPresentFraction
```
public void setMinPresentFraction(double k)
```
    Parameters:
    
    k - double the fraction of values to be removed.