Uses of Class
ubic.basecode.math.linearmodels.DesignMatrix

Packages that use DesignMatrix

Package	Description
ubic.basecode.math.linearmodels

Uses of DesignMatrix in ubic.basecode.math.linearmodels

Constructors in ubic.basecode.math.linearmodels with parameters of type DesignMatrix

Constructor	Description
LeastSquaresFit(DesignMatrix designMatrix, cern.colt.matrix.DoubleMatrix2D b, cern.colt.matrix.DoubleMatrix2D weights)	Preferred interface for weighted least squares fit between two matrices
LeastSquaresFit(DesignMatrix designMatrix, DoubleMatrix<String,String> data)	Preferred interface if you want control over how the design is set up.
LeastSquaresFit(DesignMatrix designMatrix, DoubleMatrix<String,String> data, cern.colt.matrix.DoubleMatrix2D weights)	Weighted least squares fit between two matrices
MeanVarianceEstimator(DesignMatrix designMatrix, cern.colt.matrix.DoubleMatrix2D data, cern.colt.matrix.DoubleMatrix1D librarySize)	Executes voom() to calculate weights.
MeanVarianceEstimator(DesignMatrix designMatrix, DoubleMatrix<String,String> data, cern.colt.matrix.DoubleMatrix1D librarySize)	Preferred interface if you want control over how the design is set up.