Package ubic.basecode.dataStructure.matrix

Class IntegerMatrix<R,C>

java.lang.Object

ubic.basecode.dataStructure.matrix.AbstractMatrix<R,C,Integer>

ubic.basecode.dataStructure.matrix.IntegerMatrix<R,C>

All Implemented Interfaces:

Serializable, Matrix2D<R,C,Integer>, PrimitiveMatrix<R,C,Integer>

public class IntegerMatrix<R,C>
extends AbstractMatrix<R,C,Integer>
implements PrimitiveMatrix<R,C,Integer>

Author:

pavlidis

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.basecode.dataStructure.matrix.AbstractMatrix

MAX_ROWS_TO_PRINT

Constructor Summary

Constructors

Constructor	Description
IntegerMatrix(int x, int y)

Method Summary

Modifier and Type	Method	Description
int	columns()	Get the number of columns the matrix has.
Integer	get(int row, int column)
Integer	getByKeys(R r, C c)
Integer[]	getColObj(int col)
Integer[]	getColumn(int col)
Integer	getEntry(int row, int column)
Integer	getObject(int row, int col)
Integer[]	getRow(int row)
Integer[]	getRowObj(int row)
boolean	isMissing(int i, int j)	Check if the value at a given index is missing.
int	rows()	Get the number of rows the matrix has
void	set(int row, int column, Integer value)
void	setByKeys(R r, C c, Integer v)
void	setObj(int row, int column, Integer value)
int	size()
String	toString()

Methods inherited from class ubic.basecode.dataStructure.matrix.AbstractMatrix

addColumnName, addRowName, asDoubles, assign, checkColRange, checkRowRange, containsColumnName, containsRowName, getColIndexByName, getColName, getColNames, getRowIndexByName, getRowName, getRowNameMapIterator, getRowNames, hasColNames, hasMissingValues, hasRow, hasRowNames, numMissing, setColumnName, setColumnNames, setRowName, setRowNames

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.dataStructure.matrix.Matrix2D

addColumnName, asDoubles, assign, containsColumnName, containsRowName, getColIndexByName, getColName, getColNames, getRowIndexByName, getRowName, getRowNameMapIterator, getRowNames, hasColNames, hasRow, hasRowNames, numMissing, setColumnName, setColumnNames, setRowName, setRowNames

Constructor Detail

IntegerMatrix

public IntegerMatrix(int x,
                     int y)

Method Detail

columns

public int columns()

Description copied from interface: Matrix2D

Get the number of columns the matrix has.

Specified by:

columns in interface Matrix2D<R,C,Integer>

Returns:

get

public Integer get(int row,
                   int column)

Parameters:

row -

column -

Returns:

getByKeys

public Integer getByKeys(R r,
                         C c)

Specified by:

getByKeys in interface Matrix2D<R,C,Integer>

getColObj

public Integer[] getColObj(int col)

Specified by:

getColObj in interface PrimitiveMatrix<R,C,Integer>

Returns:

getColumn

public Integer[] getColumn(int col)

getEntry

public Integer getEntry(int row,
                        int column)

Specified by:

getEntry in interface Matrix2D<R,C,Integer>

Returns:

getObject

public Integer getObject(int row,
                         int col)

Specified by:

getObject in interface PrimitiveMatrix<R,C,Integer>

Returns:

getRow

public Integer[] getRow(int row)

getRowObj

public Integer[] getRowObj(int row)

Specified by:

getRowObj in interface PrimitiveMatrix<R,C,Integer>

Returns:

isMissing

public boolean isMissing(int i,
                         int j)

Description copied from interface: Matrix2D

Check if the value at a given index is missing.

Specified by:

isMissing in interface Matrix2D<R,C,Integer>

Parameters:

i - row

j - column

Returns:

true if the value is missing, false otherwise.

rows

public int rows()

Description copied from interface: Matrix2D

Get the number of rows the matrix has

Specified by:

rows in interface Matrix2D<R,C,Integer>

Returns:

set

public void set(int row,
                int column,
                Integer value)

Specified by:

set in interface Matrix2D<R,C,Integer>

setByKeys

public void setByKeys(R r,
                      C c,
                      Integer v)

Specified by:

setByKeys in interface Matrix2D<R,C,Integer>

setObj

public void setObj(int row,
                   int column,
                   Integer value)

Parameters:

row -

column -

value -

size

public int size()

Specified by:

size in class AbstractMatrix<R,C,Integer>

Returns:

toString

public String toString()

Overrides:

toString in class Object

Returns:

java.lang.Integer