Package ubic.basecode.dataStructure.graph

Class DirectedGraphNode<K,V>

java.lang.Object

ubic.basecode.dataStructure.Visitable

ubic.basecode.dataStructure.graph.AbstractGraphNode<K,V>

ubic.basecode.dataStructure.graph.DirectedGraphNode<K,V>

All Implemented Interfaces:

Comparable<DirectedGraphNode<K,V>>, GraphNode<K,V>

public class DirectedGraphNode<K,V>
extends AbstractGraphNode<K,V>
implements Comparable<DirectedGraphNode<K,V>>

A graph node that has the concept of parents and children. Keys can be anything, but probably Strings or Integers.

Author:

Paul Pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
protected Set<K>	children
protected Set<K>	parents
protected int	topoSortOrder

Fields inherited from class ubic.basecode.dataStructure.graph.AbstractGraphNode

item, key, visited

Constructor Summary

Constructors

Constructor	Description
DirectedGraphNode(K key, V value, DirectedGraph<K,V> graph)

Method Summary

Modifier and Type	Method	Description
void	addChild(K newChildKey)
void	addParent(K newParentKey)
DirectedGraphNode<K,V>	clone()	Makes a copy of this node.
int	compareTo(DirectedGraphNode<K,V> o)	Uses the topological sort order.
Set<DirectedGraphNode<K,V>>	getAllChildNodes()	Get all the children of this node, recursively.
Set<DirectedGraphNode<K,V>>	getAllParentNodes()	Get all the parents of this node, recursively.
int	getChildCount()
DirectedGraph<K,V>	getChildGraph()	Get the subgraph starting from this node, including this node.
Set<K>	getChildKeys()
Set<DirectedGraphNode<K,V>>	getChildNodes()	Get the immediate children of this node.
DirectedGraph<K,V>	getGraph()
Set<K>	getParentKeys()
Set<DirectedGraphNode<K,V>>	getParentNodes()	Get the immediate parents of this node.
int	getTopoSortOrder()
boolean	hasChild(Object j)	Check to see if this node has a particular immediate child.
boolean	hasParent(Object j)	Check to see if this node has a particular immediate parent.
int	inDegree()
boolean	isLeaf()
int	numParents()
int	outDegree()
void	prune()	Remove connections that are to nodes not contained in this graph
void	setGraph(DirectedGraph<K,V> graph)
void	setTopoSortOrder(int i)
String	toString()

Methods inherited from class ubic.basecode.dataStructure.graph.AbstractGraphNode

getItem, getKey, isVisited, mark, setItem, setValue, unMark

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

children

protected Set<K> children

parents

protected Set<K> parents

topoSortOrder

protected int topoSortOrder

Constructor Detail

DirectedGraphNode

public DirectedGraphNode(K key,
                         V value,
                         DirectedGraph<K,V> graph)

Parameters:

key - Object

value - Object

graph - Graph

Method Detail

addChild

public void addChild(K newChildKey)

Parameters:

newChildKey - Object

addParent

public void addParent(K newParentKey)

Parameters:

newParentKey - Object

clone

public DirectedGraphNode<K,V> clone()

Makes a copy of this node. It does not make a deep copy of the contents. This should be used when making subgraphs.

Overrides:

clone in class Object

Returns:

Object

compareTo

public int compareTo(DirectedGraphNode<K,V> o)

Uses the topological sort order.

Specified by:

compareTo in interface Comparable<K>

Parameters:

o - Object

Returns:

int

getAllChildNodes

public Set<DirectedGraphNode<K,V>> getAllChildNodes()

Get all the children of this node, recursively.

getAllParentNodes

public Set<DirectedGraphNode<K,V>> getAllParentNodes()

Get all the parents of this node, recursively.

Returns:

getChildCount

public int getChildCount()

Returns:

int how many children this node has, determined recursively.

getChildGraph

public DirectedGraph<K,V> getChildGraph()

Get the subgraph starting from this node, including this node.

Returns:

Graph

getChildKeys

public Set<K> getChildKeys()

Returns:

Object

getChildNodes

public Set<DirectedGraphNode<K,V>> getChildNodes()

Get the immediate children of this node. References to the DirectedGraphNodes are given, as opposed to key values.

Returns:

Set containing the child nodes of this node.

getGraph

public DirectedGraph<K,V> getGraph()

Specified by:

getGraph in interface GraphNode<K,V>

Returns:

the Graph this belongs to.

getParentKeys

public Set<K> getParentKeys()

Returns:

Object

getParentNodes

public Set<DirectedGraphNode<K,V>> getParentNodes()

Get the immediate parents of this node. References to the DirectedGraphNodes are given, as opposed to key values.

Returns:

Set

getTopoSortOrder

public int getTopoSortOrder()

Returns:

int

hasChild

public boolean hasChild(Object j)

Check to see if this node has a particular immediate child.

Parameters:

j - Object

Returns:

boolean

hasParent

public boolean hasParent(Object j)

Check to see if this node has a particular immediate parent.

Parameters:

j - Object

Returns:

boolean

inDegree

public int inDegree()

Returns:

int number of immediate parents this node has.

isLeaf

public boolean isLeaf()

Returns:

numParents

public int numParents()

Returns:

int how many parents this node has, determined recursively.

outDegree

public int outDegree()

Returns:

int number of immediate children this node has.

prune

public void prune()

Remove connections that are to nodes not contained in this graph

setGraph

public void setGraph(DirectedGraph<K,V> graph)

setTopoSortOrder

public void setTopoSortOrder(int i)

Parameters:

i - int

toString

public String toString()

Overrides:

toString in class AbstractGraphNode<K,V>