@ParametersAreNonnullByDefault

Package ubic.basecode.ontology.providers

Interface Summary

Interface	Description
OntologyService

Class Summary

Class	Description
CellLineOntologyService	See http://www.obofoundry.org/cgi-bin/detail.cgi?id=CLO
CellTypeOntologyService	See http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell
ChebiOntologyService	Loads the CHEBI Ontology at startup in its own thread.
DiseaseOntologyService	Holds a copy of the Disease Ontology.
ExperimentalFactorOntologyService
FMAOntologyService	Holds a copy of the FMA Ontology on disk.
GenericOntologyService	A way to create ad hoc ontology services (in memory) for testing
HumanDevelopmentOntologyService
HumanPhenotypeOntologyService	See http://bioportal.bioontology.org/ontologies/45774?p=terms&conceptid=HP%3A0001264 for example.
MammalianPhenotypeOntologyService
MedicOntologyService	MEDIC ONTOLOGY USED BY PHENOCARTA, its represents MESH terms as a tree so with can use the parent structure that a normal mesh term doesnt have
MouseDevelopmentOntologyService
NIFSTDOntologyService
ObiService
SequenceOntologyService	Support for the Sequence Ontology
UberonOntologyService	Uberon
UnitsOntologyService	Support for the units ontology

Enum Summary

Enum	Description
OntologyService.InferenceMode