Package ubic.basecode.dataStructure.matrix

Class DenseObject3DMatrix<R,C,S>

java.lang.Object

ubic.basecode.dataStructure.matrix.AbstractMatrix3D<R,C,S,Object>

ubic.basecode.dataStructure.matrix.DenseObject3DMatrix<R,C,S>

All Implemented Interfaces:

Matrix3D<R,C,S,Object>

public class DenseObject3DMatrix<R,C,S>
extends AbstractMatrix3D<R,C,S,Object>

Author:

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Field Summary

Fields inherited from class ubic.basecode.dataStructure.matrix.AbstractMatrix3D

colMap, colNames, rowMap, rowNames, sliceMap, sliceNames

Constructor Summary

Constructors

Constructor	Description
DenseObject3DMatrix(int slices, int rows, int columns)
DenseObject3DMatrix(Object[][][] data)
DenseObject3DMatrix(Object[][][] data, List<S> sliceNames, List<R> rowNames, List<C> colNames)
DenseObject3DMatrix(List<S> sliceNames, List<R> rowNames, List<C> colNames)

Method Summary

Modifier and Type	Method	Description
int	columns()	Get the number of columns the matrix has.
Object	get(int slice, int row, int col)
Object[]	getCol(int slice, int col)
Object	getObject(int slice, int row, int col)
Object[]	getRow(int slice, int row)
Object[][]	getSlice(int slice)
boolean	isMissing(int slice, int row, int col)	Check if the value at a given index is missing.
int	numMissing()	Return the number of missing values in the matrix.
int	rows()	Get the number of rows the matrix has
void	set(int slice, int row, int col, Object val)
int	slices()

Methods inherited from class ubic.basecode.dataStructure.matrix.AbstractMatrix3D

addColumnName, addRowName, addSliceName, containsColumnName, containsRowName, containsSliceName, getColIndexByName, getColName, getColNameIterator, getColNames, getRowIndexByName, getRowName, getRowNameIterator, getRowNames, getSliceIndexByName, getSliceName, getSliceNameIterator, getSliceNames, hasColNames, hasRow, hasRowNames, hasSliceNames, setColumnNames, setRowNames, setSliceNames

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DenseObject3DMatrix

public DenseObject3DMatrix(int slices,
                           int rows,
                           int columns)

DenseObject3DMatrix

public DenseObject3DMatrix(List<S> sliceNames,
                           List<R> rowNames,
                           List<C> colNames)

DenseObject3DMatrix

public DenseObject3DMatrix(Object[][][] data)

DenseObject3DMatrix

public DenseObject3DMatrix(Object[][][] data,
                           List<S> sliceNames,
                           List<R> rowNames,
                           List<C> colNames)

Method Detail

columns

public int columns()

Description copied from interface: Matrix3D

Get the number of columns the matrix has.

Specified by:

columns in interface Matrix3D<R,C,S,Object>

Specified by:

columns in class AbstractMatrix3D<R,C,S,Object>

Returns:

int

get

public Object get(int slice,
                  int row,
                  int col)

getCol

public Object[] getCol(int slice,
                       int col)

getObject

public Object getObject(int slice,
                        int row,
                        int col)

getRow

public Object[] getRow(int slice,
                       int row)

getSlice

public Object[][] getSlice(int slice)

isMissing

public boolean isMissing(int slice,
                         int row,
                         int col)

Description copied from interface: Matrix3D

Check if the value at a given index is missing.

Specified by:

isMissing in interface Matrix3D<R,C,S,Object>

Specified by:

isMissing in class AbstractMatrix3D<R,C,S,Object>

Returns:

true if the value is missing, false otherwise.

numMissing

public int numMissing()

Description copied from interface: Matrix3D

Return the number of missing values in the matrix.

Specified by:

numMissing in interface Matrix3D<R,C,S,Object>

Specified by:

numMissing in class AbstractMatrix3D<R,C,S,Object>

Returns:

number missing

rows

public int rows()

Description copied from interface: Matrix3D

Get the number of rows the matrix has

Specified by:

rows in interface Matrix3D<R,C,S,Object>

Specified by:

rows in class AbstractMatrix3D<R,C,S,Object>

Returns:

int

set

public void set(int slice,
                int row,
                int col,
                Object val)

slices

public int slices()

Specified by:

slices in interface Matrix3D<R,C,S,Object>

Specified by:

slices in class AbstractMatrix3D<R,C,S,Object>