Package | Description |
---|---|
ubic.erminej.analysis | |
ubic.erminej.gui |
Modifier and Type | Field and Description |
---|---|
protected Histogram |
GeneSetResamplingPvalGenerator.hist |
protected Histogram |
AbstractResamplingGeneSetScore.hist |
Modifier and Type | Method and Description |
---|---|
Histogram |
GeneSetResamplingBackgroundDistributionGenerator.generateNullDistribution(StatusViewer m)
Used for methods which require randomly sampling classes to generate a null distribution of scores based on
gene-by-gene scores.
|
Histogram |
ResamplingCorrelationGeneSetScore.generateNullDistribution(StatusViewer messenger)
Build background distributions of within-gene set mean correlations.
|
Histogram |
NullDistributionGenerator.generateNullDistribution(StatusViewer messenger) |
Histogram |
GeneSetResamplingBackgroundDistributionGenerator.generateNulldistribution(StatusViewer m,
long randomSeed)
Generate a null distribution, using a selected random seed.
|
Histogram |
ResamplingCorrelationGeneSetScore.generateNulldistribution(StatusViewer m,
long randomSeed)
Generate a null distribution, using a selected random seed.
|
Histogram |
GeneSetPvalRun.getHist() |
Histogram |
AbstractResamplingGeneSetScore.getHist() |
Modifier and Type | Method and Description |
---|---|
void |
CorrelationPvalGenerator.setHistogram(Histogram hist) |
Constructor and Description |
---|
CorrelationPvalGenerator(SettingsHolder settings,
GeneAnnotations geneAnnots,
DoubleMatrix<Probe,String> rawData,
Histogram hist,
StatusViewer messenger) |
Constructor and Description |
---|
JHistViewer(Histogram hist,
int inSize,
double rawScore)
This is the default constructor
|
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