ubic.erminej.data

Class AnnotationFileFetcher

java.lang.Object

ubic.erminej.data.AnnotationFileFetcher

public class AnnotationFileFetcher
extends Object

Assistance in getting gene annotation files.

Version:

$Id: AnnotationFileFetcher.java,v 1.6 2013/05/20 02:21:17 paul Exp $

Author:

paul

Constructor Summary

Constructors

Constructor and Description
AnnotationFileFetcher(SettingsHolder settingsHolder)

Method Summary

Methods

Modifier and Type	Method and Description
protected List<ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject>	convert(com.sdicons.json.model.JSONValue v)
List<ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject>	fetchList() Get the list of available annotations
ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject	pickAnnotation() Show a list of available annotation files.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationFileFetcher

public AnnotationFileFetcher(SettingsHolder settingsHolder)

Method Detail

pickAnnotation

public ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject pickAnnotation()
                                                                              throws IOException

Show a list of available annotation files.

Throws:

IOException

fetchList

public List<ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject> fetchList()
                                                                               throws IOException

Get the list of available annotations

Returns:

Throws:

IOException

convert

protected List<ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject> convert(com.sdicons.json.model.JSONValue v)

Parameters:

v -

Returns: