compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• pavlab:gemma-gsec:jar:0.0.22-SNAPSHOT

  gsec
  Description: Curated dependencies for the Pavlidis Lab's Java applications. URL: https://github.com/PavlidisLab/pavlab-starter-parent/gemma-gsec Project Licenses: The Apache Software License, Version 2.0

  • commons-logging:commons-logging:jar:1.3.5 (compile)

    Apache Commons Logging
    Description: Apache Commons Logging is a thin adapter allowing configurable bridging to other, well-known logging systems. URL: https://commons.apache.org/proper/commons-logging/ Project Licenses: Apache-2.0

  • org.hibernate:hibernate-core:jar:4.2.21.Final (compile)

    A Hibernate O/RM Module
    Description: A module of the Hibernate O/RM project URL: http://hibernate.org Project Licenses: GNU Lesser General Public License

    • antlr:antlr:jar:2.7.7 (compile)

      AntLR Parser Generator
      Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://www.antlr.org/ Project Licenses: BSD License

    • org.javassist:javassist:jar:3.30.2-GA (runtime)

      Javassist
      Description: Javassist (JAVA programming ASSISTant) makes Java bytecode manipulation simple. It is a class library for editing bytecodes in Java. URL: https://www.javassist.org/ Project Licenses: MPL 1.1, LGPL 2.1, Apache License 2.0

    • org.jboss.spec.javax.transaction:jboss-transaction-api_1.1_spec:jar:1.0.1.Final (compile)

      Java Transaction API
      Description: The Java Transaction 1.1 API classes URL: http://www.jboss.org/jboss-transaction-api_1.1_spec Project Licenses: Common Development and Distribution License, GNU General Public License, Version 2 with the Classpath Exception

    • org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final (compile)

      JPA 2.0 API
      Description: Hibernate definition of the Java Persistence 2.0 (JSR 317) API. URL: http://hibernate.org Project Licenses: Unnamed

  • org.hibernate.common:hibernate-commons-annotations:jar:4.0.5.Final (runtime)

    Hibernate Commons Annotations
    Description: Common reflection code used in support of annotation processing URL: http://hibernate.org Project Licenses: GNU Lesser General Public License

    • org.jboss.logging:jboss-logging:jar:3.6.1.Final (runtime)

      JBoss Logging 3
      Description: The JBoss Logging Framework URL: http://www.jboss.org Project Licenses: Apache License 2.0

    • org.jboss.logging:jboss-logging-annotations:jar:3.0.4.Final (runtime)

      JBoss Logging I18n Annotations
      Description: Provides, via submodules, a base configuration for JBoss project builds, as well as a derived configuration supporting multi-release JARs URL: https://jboss.org Project Licenses: Apache License 2.0

  • org.dom4j:dom4j:jar:2.2.0 (runtime)

    dom4j
    Description: flexible XML framework for Java URL: http://dom4j.github.io/ Project Licenses: BSD 3-clause New License

  • org.hibernate:hibernate-ehcache:jar:4.2.21.Final (runtime)

    A Hibernate O/RM Module
    Description: A module of the Hibernate O/RM project URL: http://hibernate.org Project Licenses: GNU Lesser General Public License

  • net.sf.ehcache:ehcache-core:jar:2.4.3 (compile)

    Ehcache Core
    Description: This is the ehcache core module. Pair it with other modules for added functionality. URL: http://ehcache.org Project Licenses: The Apache Software License, Version 2.0

    • org.slf4j:slf4j-api:jar:1.7.36 (compile)

      SLF4J API Module
      Description: The slf4j API URL: http://www.slf4j.org Project Licenses: MIT License

  • org.springframework:spring-context:jar:3.2.18.RELEASE (compile)

    Spring Context
    Description: Spring Context URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

    • org.springframework:spring-aop:jar:3.2.18.RELEASE (compile)

      Spring AOP
      Description: Spring AOP URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

    • org.springframework:spring-beans:jar:3.2.18.RELEASE (compile)

      Spring Beans
      Description: Spring Beans URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

    • org.springframework:spring-expression:jar:3.2.18.RELEASE (compile)

      Spring Expression Language (SpEL)
      Description: Spring Expression Language (SpEL) URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework:spring-context-support:jar:3.2.18.RELEASE (runtime)

    Spring Context Support
    Description: Spring Context Support URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework:spring-tx:jar:3.2.18.RELEASE (compile)

    Spring Transaction
    Description: Spring Transaction URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework:spring-core:jar:3.2.18.RELEASE (compile)

    Spring Core
    Description: Spring Core URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework.security:spring-security-core:jar:3.2.10.RELEASE (compile)

    spring-security-core
    Description: spring-security-core URL: http://spring.io/spring-security Project Licenses: The Apache Software License, Version 2.0

  • org.springframework.security:spring-security-acl:jar:3.2.10.RELEASE (compile)

    spring-security-acl
    Description: spring-security-acl URL: http://spring.io/spring-security Project Licenses: The Apache Software License, Version 2.0

    • org.springframework:spring-jdbc:jar:3.2.18.RELEASE (compile)

      Spring JDBC
      Description: Spring JDBC URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework.security:spring-security-web:jar:3.2.10.RELEASE (compile)

    spring-security-web
    Description: spring-security-web URL: http://spring.io/spring-security Project Licenses: The Apache Software License, Version 2.0

    • org.springframework:spring-web:jar:3.2.18.RELEASE (compile)

      Spring Web
      Description: Spring Web URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • javax.servlet:javax.servlet-api:jar:3.1.0 (provided)

    Java Servlet API
    Description: Java.net - The Source for Java Technology Collaboration URL: http://servlet-spec.java.net Project Licenses: CDDL + GPLv2 with classpath exception

  • aopalliance:aopalliance:jar:1.0 (compile)

    AOP alliance
    Description: AOP Alliance URL: http://aopalliance.sourceforge.net Project Licenses: Public Domain

  • org.aspectj:aspectjweaver:jar:1.9.24 (compile)

    AspectJ Weaver
    Description: The AspectJ weaver applies aspects to Java classes. It can be used as a Java agent in order to apply load-time weaving (LTW) during class-loading and also contains the AspectJ runtime classes. URL: https://www.eclipse.org/aspectj/ Project Licenses: Eclipse Public License - v 2.0

  • org.json:json:jar:20250107 (compile)

    JSON in Java

    Description: JSON is a light-weight, language independent, data interchange format. See http://www.JSON.org/ The files in this package implement JSON encoders/decoders in Java. It also includes the capability to convert between JSON and XML, HTTP headers, Cookies, and CDL. This is a reference implementation. There are a large number of JSON packages in Java. Perhaps someday the Java community will standardize on one. Until then, choose carefully. URL: https://github.com/douglascrockford/JSON-java Project Licenses: Public Domain

  • com.google.code.findbugs:jsr305:jar:3.0.2 (compile)

    FindBugs-jsr305
    Description: JSR305 Annotations for Findbugs URL: http://findbugs.sourceforge.net/ Project Licenses: The Apache Software License, Version 2.0

  • org.springframework:spring-test:jar:3.2.18.RELEASE (test)

    Spring TestContext Framework
    Description: Spring TestContext Framework URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • org.springframework:spring-orm:jar:3.2.18.RELEASE (test)

    Spring Object/Relational Mapping
    Description: Spring Object/Relational Mapping URL: https://github.com/SpringSource/spring-framework Project Licenses: The Apache Software License, Version 2.0

  • junit:junit:jar:4.13.2 (test)

    JUnit
    Description: JUnit is a unit testing framework for Java, created by Erich Gamma and Kent Beck. URL: http://junit.org Project Licenses: Eclipse Public License 1.0

    • org.hamcrest:hamcrest-core:jar:1.3 (test)

      Hamcrest Core
      Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project Licenses: New BSD License

  • org.assertj:assertj-core:jar:3.27.4 (test)

    AssertJ Core
    Description: Rich and fluent assertions for testing in Java URL: https://assertj.github.io/doc/#assertj-core Project Licenses: Apache-2.0

    • net.bytebuddy:byte-buddy:jar:1.15.11 (test)

      Byte Buddy (without dependencies)
      Description: Byte Buddy is a Java library for creating Java classes at run time. This artifact is a build of Byte Buddy with all ASM dependencies repackaged into its own name space. URL: https://bytebuddy.net/byte-buddy Project Licenses: Apache License, Version 2.0

  • org.mockito:mockito-core:jar:5.17.0 (test)

    mockito-core
    Description: Mockito mock objects library core API and implementation URL: https://github.com/mockito/mockito Project Licenses: MIT

    • net.bytebuddy:byte-buddy-agent:jar:1.15.11 (test)

      Byte Buddy agent
      Description: The Byte Buddy agent offers convenience for attaching an agent to the local or a remote VM. URL: https://bytebuddy.net/byte-buddy-agent Project Licenses: Apache License, Version 2.0

    • org.objenesis:objenesis:jar:3.3 (test)

      Objenesis
      Description: A library for instantiating Java objects URL: http://objenesis.org/objenesis Project Licenses: Apache License, Version 2.0

  • com.h2database:h2:jar:2.3.232 (test)

    H2 Database Engine
    Description: H2 Database Engine URL: https://h2database.com Project Licenses: MPL 2.0, EPL 1.0

  • org.apache.logging.log4j:log4j-core:jar:2.25.1 (test)
    • org.apache.logging.log4j:log4j-api:jar:2.25.1 (test)
  • org.apache.logging.log4j:log4j-1.2-api:jar:2.25.1 (test)
  • org.apache.logging.log4j:log4j-slf4j-impl:jar:2.25.1 (test)