Package ubic.gemma.persistence.service.expression.experiment

Class SingleCellExpressionExperimentServiceTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseDatabaseTest

ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentServiceTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
public class SingleCellExpressionExperimentServiceTest
extends BaseDatabaseTest

Tests covering integration of single-cell.

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

BaseDatabaseTest.BaseDatabaseTestContextConfiguration

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

aclService

Fields inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

jdbcTemplate, simpleJdbcTemplate

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
SingleCellExpressionExperimentServiceTest()

Method Summary

Modifier and Type	Method	Description
void	resetMocks()
void	setUp()
void	testAddSingleCellDataVectors()
void	testAddSingleCellDataVectorsTwice()
void	testAddSingleCellDataVectorsWhenThereIsAlreadyAPreferredSetOfVectors()
void	testAddSingleCellDataVectorsWithInteger()
void	testGetCellLevelCharacteristics()
void	testGetPreferredCellTypeLabellingWhenNonUnique()	This a behaviour test when the labelling is not unique.
void	testGetSingleCellDataMatrix()
void	testGetSingleCellDataVectors()
void	testGetSingleCellDimensionWithoutCellIds()
void	testRecreateCellTypeFactor()
void	testRelabelCellTypes()
void	testRemoveVectors()
void	testRemoveVectorsSharingADimension()
void	testReplaceVectors()
void	testUpdateSparsityMetrics()

Methods inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

flushAndClearSession

Methods inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

countRowsInTable, countRowsInTableWhere, deleteFromTables, dropTables, executeSqlScript, setDataSource, setSqlScriptEncoding

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SingleCellExpressionExperimentServiceTest

public SingleCellExpressionExperimentServiceTest()

Method Detail

setUp

public void setUp()

resetMocks

public void resetMocks()

testGetSingleCellDimensionWithoutCellIds

public void testGetSingleCellDimensionWithoutCellIds()

testGetSingleCellDataMatrix

public void testGetSingleCellDataMatrix()

testGetSingleCellDataVectors

public void testGetSingleCellDataVectors()

testAddSingleCellDataVectors

public void testAddSingleCellDataVectors()

testAddSingleCellDataVectorsWithInteger

public void testAddSingleCellDataVectorsWithInteger()

testAddSingleCellDataVectorsTwice

public void testAddSingleCellDataVectorsTwice()

testAddSingleCellDataVectorsWhenThereIsAlreadyAPreferredSetOfVectors

public void testAddSingleCellDataVectorsWhenThereIsAlreadyAPreferredSetOfVectors()

testReplaceVectors

public void testReplaceVectors()

testRemoveVectors

public void testRemoveVectors()

testRemoveVectorsSharingADimension

public void testRemoveVectorsSharingADimension()

testRelabelCellTypes

public void testRelabelCellTypes()

testGetPreferredCellTypeLabellingWhenNonUnique

public void testGetPreferredCellTypeLabellingWhenNonUnique()

This a behaviour test when the labelling is not unique. This can be caused by multiple preferred single-cell QTs or multiple preferred cell type labellings.

testRecreateCellTypeFactor

public void testRecreateCellTypeFactor()

testGetCellLevelCharacteristics

public void testGetCellLevelCharacteristics()

testUpdateSparsityMetrics

public void testUpdateSparsityMetrics()