Package ubic.gemma.core.datastructure.matrix

Class ExpressionDataTestMatrix

java.lang.Object

ubic.gemma.core.datastructure.matrix.BaseExpressionDataMatrix<Double>

ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrix

ubic.gemma.core.datastructure.matrix.ExpressionDataTestMatrix

All Implemented Interfaces:

Serializable, ubic.gemma.core.datastructure.matrix.BulkExpressionDataMatrix<Double>, ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix<Double>, ubic.gemma.core.datastructure.matrix.ExpressionDataPrimitiveDoubleMatrix

public class ExpressionDataTestMatrix
extends ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrix

Creates a sample small test matrix, not persistent. Useful for testing algorithms. (This is not a test!)

Author:

paul

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.datastructure.matrix.BaseExpressionDataMatrix

bioAssayDimensions, columnAssayMap, columnBioAssayMapByInteger, columnBioMaterialMap, columnBioMaterialMapByInteger, expressionExperiment, quantitationTypes, rowDesignElementMapByInteger, rowElementMap

Constructor Summary

Constructors

Constructor	Description
ExpressionDataTestMatrix()

Method Summary

Methods inherited from class ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrix

columns, get, get, get, getAsDouble, getAsDoubles, getColumn, getColumn, getColumnAsDoubles, getColumnAsDoubles, getColumns, getMatrix, getRanks, getRawMatrix, getRawMatrixAsDoubles, getRow, getRow, getRowAsDoubles, getRowAsDoubles, getRowNames, hasMissingValues, rows, set, set, setRow, toProcessedDataVectors, toRawDataVectors, toString, vectorsToMatrix

Methods inherited from class ubic.gemma.core.datastructure.matrix.BaseExpressionDataMatrix

addToRowMaps, columns, getBestBioAssayDimension, getBioAssayDimension, getBioAssayForColumn, getBioAssaysForColumn, getBioMaterialForColumn, getColumnIndex, getColumnIndex, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getQuantitationTypes, getRowElement, getRowElement, getRowElements, getRowIndex, init, selectVectors, selectVectors, selectVectors, selectVectors, setMatBioAssayValues, setUpColumnElements

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix

getDesignElementForRow, getDesignElements, getRowElement, getRowElement, getRowElements, getRowIndex

Constructor Detail

ExpressionDataTestMatrix

public ExpressionDataTestMatrix()