Index

A B C D E F G H J L M O P R S T U V W
All Classes and Interfaces|All Packages|Constant Field Values

A

AbstractDwrReplyMatchers - Class in ubic.gemma.web.util.dwr

AbstractDwrReplyMatchers(String, int, int) - Constructor for class ubic.gemma.web.util.dwr.AbstractDwrReplyMatchers

AbstractDwrReplyParser - Class in ubic.gemma.web.util.dwr

AbstractDwrReplyParser(String, int, int) - Constructor for class ubic.gemma.web.util.dwr.AbstractDwrReplyParser

afterPropertiesSet() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

and(Object...) - Method in class ubic.gemma.web.util.dwr.DwrRequestBuilder

Chain one additional DWR call.

ArrayDesignControllerTest - Class in ubic.gemma.web.controller.expression.arrayDesign

ArrayDesignControllerTest() - Constructor for class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

AuditControllerTest - Class in ubic.gemma.web.controller.common.auditAndSecurity

AuditControllerTest() - Constructor for class ubic.gemma.web.controller.common.auditAndSecurity.AuditControllerTest

B

BaseSpringWebTest - Class in ubic.gemma.web.util

Deprecated.

favour the simpler BaseWebIntegrationTest for new tests

BaseSpringWebTest() - Constructor for class ubic.gemma.web.util.BaseSpringWebTest

Deprecated.

BaseWebIntegrationTest - Class in ubic.gemma.web.util

Base class for web integration tests.

BaseWebIntegrationTest() - Constructor for class ubic.gemma.web.util.BaseWebIntegrationTest

BaseWebTest - Class in ubic.gemma.web.util

Base class for a Web-based unit test.

BaseWebTest() - Constructor for class ubic.gemma.web.util.BaseWebTest

BaseWebTest.BaseWebTestContextConfiguration - Class in ubic.gemma.web.util

BaseWebTestContextConfiguration() - Constructor for class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

batch(int) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultMatchers

Match a batch of DWR results.

BibRefControllerTest - Class in ubic.gemma.web.controller.common.description.bibref

Tests the BibliographicReferenceController

BibRefControllerTest() - Constructor for class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

buildRequest(ServletContext) - Method in class ubic.gemma.web.util.dwr.DwrRequestBuilder

C

callback() - Method in class ubic.gemma.web.util.dwr.DwrBatchMatchers

callback() - Static method in class ubic.gemma.web.util.dwr.MockDwrResultMatchers

callback(int) - Method in class ubic.gemma.web.util.dwr.DwrBatchMatchers

Match a DWR callback.

callback(int) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultMatchers

Match a DWR callback.

D

DifferentialExpressionAnalysisControllerTest - Class in ubic.gemma.web.controller.diff

DifferentialExpressionAnalysisControllerTest() - Constructor for class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

doesNotExist() - Method in class ubic.gemma.web.util.dwr.AbstractDwrReplyMatchers

dwr(Class, String, Object...) - Method in class ubic.gemma.web.util.dwr.MockDwrBatchRequestBuilders

Perform a DWR call.

dwr(Class, String, Object...) - Static method in class ubic.gemma.web.util.dwr.MockDwrRequestBuilders

Perform a DWR call.

dwrBatch(int) - Static method in class ubic.gemma.web.util.dwr.MockDwrRequestBuilders

Perform a batched DWR call.

DwrBatchHandlers - Class in ubic.gemma.web.util.dwr

Handles DWR batches.

DwrBatchHandlers(int) - Constructor for class ubic.gemma.web.util.dwr.DwrBatchHandlers

DwrBatchMatchers - Class in ubic.gemma.web.util.dwr

Match DWR batch results.

DwrBatchMatchers(int) - Constructor for class ubic.gemma.web.util.dwr.DwrBatchMatchers

DwrCallbackHandler<T> - Class in ubic.gemma.web.util.dwr

DwrCallbackHandler(int, int, Consumer) - Constructor for class ubic.gemma.web.util.dwr.DwrCallbackHandler

DwrCallbackMatchers - Class in ubic.gemma.web.util.dwr

Matches successful DWR replies.

DwrCallbackMatchers(int, int) - Constructor for class ubic.gemma.web.util.dwr.DwrCallbackMatchers

DwrException - Class in ubic.gemma.web.util.dwr

DwrException() - Constructor for class ubic.gemma.web.util.dwr.DwrException

DwrExceptionHandler - Class in ubic.gemma.web.util.dwr

DwrExceptionHandler(int, int, Consumer) - Constructor for class ubic.gemma.web.util.dwr.DwrExceptionHandler

DwrExceptionMatchers - Class in ubic.gemma.web.util.dwr

Matches erroneous DWR replies.

DwrExceptionMatchers(int, int) - Constructor for class ubic.gemma.web.util.dwr.DwrExceptionMatchers

DwrRequestBuilder - Class in ubic.gemma.web.util.dwr

Request builder that allows multiple DWR calls to be performed.

DwrRequestBuilder(String, Class, String, int) - Constructor for class ubic.gemma.web.util.dwr.DwrRequestBuilder

dwrStaticPage(String) - Static method in class ubic.gemma.web.util.dwr.MockDwrRequestBuilders

Request the DWR static page.

E

EntityDelegatorTest - Class in ubic.gemma.web.util

EntityDelegatorTest() - Constructor for class ubic.gemma.web.util.EntityDelegatorTest

ErrorPagesTest - Class in ubic.gemma.web.controller

ErrorPagesTest() - Constructor for class ubic.gemma.web.controller.ErrorPagesTest

exception() - Method in class ubic.gemma.web.util.dwr.DwrBatchMatchers

exception() - Static method in class ubic.gemma.web.util.dwr.MockDwrResultMatchers

exception(int) - Method in class ubic.gemma.web.util.dwr.DwrBatchMatchers

Match a DWR exception.

exception(int) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultMatchers

Match a DWR exception.

exceptionResolver() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

exist() - Method in class ubic.gemma.web.util.dwr.AbstractDwrReplyMatchers

ExperimentalDesignControllerIntegrationTest - Class in ubic.gemma.web.controller.expression.experiment

ExperimentalDesignControllerIntegrationTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

ExperimentalDesignControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExperimentalDesignControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

ExpressionDataFileUploadControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExpressionDataFileUploadControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExpressionDataFileUploadControllerTest

ExpressionExperimentControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExpressionExperimentControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

ExpressionExperimentEditControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExpressionExperimentEditControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

ExpressionExperimentQCControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExpressionExperimentQCControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentQCControllerTest

F

FileUploadUtilTest - Class in ubic.gemma.web.util.upload

FileUploadUtilTest() - Constructor for class ubic.gemma.web.util.upload.FileUploadUtilTest

G

getBatch(int) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultHandlers

getCallback(int, Consumer) - Method in class ubic.gemma.web.util.dwr.DwrBatchHandlers

getCallback(int, Consumer) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultHandlers

getCallback(Consumer) - Method in class ubic.gemma.web.util.dwr.DwrBatchHandlers

getCallback(Consumer) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultHandlers

getException(int, Consumer) - Method in class ubic.gemma.web.util.dwr.DwrBatchHandlers

getException(int, Consumer) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultHandlers

getException(Consumer) - Method in class ubic.gemma.web.util.dwr.DwrBatchHandlers

getException(Consumer) - Static method in class ubic.gemma.web.util.dwr.MockDwrResultHandlers

getReply(MvcResult) - Method in class ubic.gemma.web.util.dwr.AbstractDwrReplyParser

H

handle(MvcResult) - Method in class ubic.gemma.web.util.dwr.DwrCallbackHandler

handle(MvcResult) - Method in class ubic.gemma.web.util.dwr.DwrExceptionHandler

HomePageControllerTest - Class in ubic.gemma.web.controller.common

HomePageControllerTest() - Constructor for class ubic.gemma.web.controller.common.HomePageControllerTest

J

javaClassName(String) - Method in class ubic.gemma.web.util.dwr.DwrExceptionMatchers

JOB_LENGTH - Static variable in class ubic.gemma.web.controller.job.MockLongJobController

L

LoggingIntegrationTest - Class in ubic.gemma.web.util

LoggingIntegrationTest() - Constructor for class ubic.gemma.web.util.LoggingIntegrationTest

M

mailEngine() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

message(String) - Method in class ubic.gemma.web.util.dwr.DwrExceptionMatchers

MessageSourceTest - Class in ubic.gemma.web.util

MessageSourceTest() - Constructor for class ubic.gemma.web.util.MessageSourceTest

messageUtil() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

MockDwrBatchRequestBuilders - Class in ubic.gemma.web.util.dwr

MockDwrBatchRequestBuilders(String, int) - Constructor for class ubic.gemma.web.util.dwr.MockDwrBatchRequestBuilders

MockDwrRequestBuilders - Class in ubic.gemma.web.util.dwr

MockDwrRequestBuilders() - Constructor for class ubic.gemma.web.util.dwr.MockDwrRequestBuilders

MockDwrResultHandlers - Class in ubic.gemma.web.util.dwr

Handles DWR results.

MockDwrResultHandlers() - Constructor for class ubic.gemma.web.util.dwr.MockDwrResultHandlers

MockDwrResultMatchers - Class in ubic.gemma.web.util.dwr

Match DWR results.

MockDwrResultMatchers() - Constructor for class ubic.gemma.web.util.dwr.MockDwrResultMatchers

MockLongJobController - Class in ubic.gemma.web.controller.job

Controller that does nothing except wait a while.

MockLongJobController() - Constructor for class ubic.gemma.web.controller.job.MockLongJobController

O

OntologyControllerTest - Class in ubic.gemma.web.controller.ontology

OntologyControllerTest() - Constructor for class ubic.gemma.web.controller.ontology.OntologyControllerTest

P

perform(RequestBuilder) - Method in class ubic.gemma.web.util.BaseSpringWebTest

Deprecated.

perform(RequestBuilder) - Method in class ubic.gemma.web.util.BaseWebIntegrationTest

perform(RequestBuilder) - Method in class ubic.gemma.web.util.BaseWebTest

ProgressStatusControllerTest - Class in ubic.gemma.web.controller.job

Test of long job control.

ProgressStatusControllerTest() - Constructor for class ubic.gemma.web.controller.job.ProgressStatusControllerTest

PubMedQueryControllerTest - Class in ubic.gemma.web.controller.common.description.bibref

PubMedQueryControllerTest() - Constructor for class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

R

ReCaptchaTest - Class in ubic.gemma.web.controller.common.auditAndSecurity.recaptcha

ReCaptchaTest() - Constructor for class ubic.gemma.web.controller.common.auditAndSecurity.recaptcha.ReCaptchaTest

removeAnnotationDir() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

replyPattern - Variable in class ubic.gemma.web.util.dwr.AbstractDwrReplyParser

resetMocks() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

resetMocks() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

resetMocks() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentQCControllerTest

RssFeedControllerTest - Class in ubic.gemma.web.controller.common.rss

RssFeedControllerTest() - Constructor for class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

runJob(TaskCommand) - Method in class ubic.gemma.web.controller.job.MockLongJobController

S

SecurityControllerTest - Class in ubic.gemma.web.controller.security

SecurityControllerTest() - Constructor for class ubic.gemma.web.controller.security.SecurityControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

setUp() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

setUp() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

setUp() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

setUp() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

setUp() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

setUp() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

setUp() - Static method in class ubic.gemma.web.util.LoggingIntegrationTest

SignupControllerTest - Class in ubic.gemma.web.controller.common.auditAndSecurity

This test replaces the recaptcha service used by SignupController, so it is annotated with DirtiesContext to invalidate the context once all the tests have completed.

SignupControllerTest() - Constructor for class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

StaticAssetResolverTest - Class in ubic.gemma.web.util

StaticAssetResolverTest() - Constructor for class ubic.gemma.web.util.StaticAssetResolverTest

T

tearDown() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

tearDown() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

tearDown() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

test() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.recaptcha.ReCaptchaTest

test() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

test() - Method in class ubic.gemma.web.controller.ErrorPagesTest

test() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

test() - Method in class ubic.gemma.web.util.EntityDelegatorTest

test() - Method in class ubic.gemma.web.util.MessageSourceTest

test() - Method in class ubic.gemma.web.util.StaticAssetResolverTest

testAddCharacteristicToFactorValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testAddStatementToFactorValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testAddUpdateEvent() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.AuditControllerTest

testBatchCall() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testCancelledRun() - Method in class ubic.gemma.web.controller.job.ProgressStatusControllerTest

testClearNeedsAttention() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCopyUploadedFileStreamClosed() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

testCopyUploadFileWhenFileContainsDirectory() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

testCreateExperimentalFactor() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testCreateFactorValueCharacteristic() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCreateFactorValueWithBlankCategory() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCreateFactorValueWithBlankValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testDelete() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testDeleteOfNonExistingEntry() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testDiffExAnalysisControllerTestPage() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testDisplayForm() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testDownloadAnnotationsWhenFileCannotBeCreated() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

testEntityDelegatorWithNullId() - Method in class ubic.gemma.web.util.EntityDelegatorTest

testFailedRun() - Method in class ubic.gemma.web.controller.job.ProgressStatusControllerTest

testFixDenormalizedQt() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testGemmaOntologyUnavailable() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetExperimentalFactors() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testGetExperimentalFactorValues() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testGetInfo() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

Experiment has to be public.

testGetLatestExperiments() - Method in class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

testGetMissingTerm() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetObo() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetTerm() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetTgfvoAsHtml() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetTgfvoAsRdf() - Method in class ubic.gemma.web.controller.ontology.OntologyControllerTest

testGetUploadedFile() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

testHomePage() - Method in class ubic.gemma.web.controller.common.HomePageControllerTest

testImageTags() - Method in class ubic.gemma.web.util.StaticAssetResolverTest

testIndex() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testJsEngine() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testLoadStatusSummariesLimit() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

testMarkAsNeedsAttention() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testMarkAsNeedsAttentionWhenFactorValueIsAlreadyMarked() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testMessageDefinedInGemmaCore() - Method in class ubic.gemma.web.util.MessageSourceTest

testMissingEndpoint() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testMultipleCalls() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

testNeedsAttentionIsResetWhenFVIsSaved() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testOnSubmit() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitAlreadyExists() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitInvalidValue() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitNotFound() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testRedirectionToHomePage() - Method in class ubic.gemma.web.controller.common.HomePageControllerTest

testRedirectionToHomePageWithQueryParams() - Method in class ubic.gemma.web.controller.common.HomePageControllerTest

testRemoveUsersFromGroupDisallowed() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

testRootLogger() - Method in class ubic.gemma.web.util.LoggingIntegrationTest

testScriptTag() - Method in class ubic.gemma.web.util.StaticAssetResolverTest

testShowAllArrayDesigns() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

testShowAllForExperiments() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowById() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowByPubMedId() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowByPubMedIdThatDoesNotExistInSystem() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowExperimentalDesign() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testShowExperimentalDesignByExperimentId() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testShowExperimentalDesignByExperimentShortName() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testSignificantChangeOnPreferredQt() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testSignup() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWhenRecaptchaIsDisabled() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWithPasswordDosentMatch() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWithRecaptchaIsInvalid() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testStyleTag() - Method in class ubic.gemma.web.util.StaticAssetResolverTest

testSuccessfulRun() - Method in class ubic.gemma.web.controller.job.ProgressStatusControllerTest

testSwitchNonPreferredVectorToPreferred() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testSwitchPreferredVectorToNonPreferred() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testThatJerseyServerRuntimeLoggerDoesNotUseTheSlackAppender() - Method in class ubic.gemma.web.util.LoggingIntegrationTest

testUndefinedTestPage() - Method in class ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest

This error is produced via HttpServletResponse.sendError(int) and thus is not intercepted by Spring's error handler.

testUpdateFactorValueCharacteristic() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testUpdateFactorValueStatement() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testUpdatePermissions() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

testUpdatePreferredSingleCellVectors() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testUpdatePreferredSingleCellVectorsToNonPreferred() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditControllerTest

testUpdatePubMed() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

testUpdatePubMedAsAnonymousUser() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

testValidate() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionDataFileUploadControllerTest

testVisualizeCorrelationMatrix() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentQCControllerTest

testVisualizePvalueDist() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentQCControllerTest

testWhenClassUsesSimpleName() - Method in class ubic.gemma.web.util.EntityDelegatorTest

U

ubic.gemma.web.controller - package ubic.gemma.web.controller

ubic.gemma.web.controller.common - package ubic.gemma.web.controller.common

ubic.gemma.web.controller.common.auditAndSecurity - package ubic.gemma.web.controller.common.auditAndSecurity

ubic.gemma.web.controller.common.auditAndSecurity.recaptcha - package ubic.gemma.web.controller.common.auditAndSecurity.recaptcha

ubic.gemma.web.controller.common.description.bibref - package ubic.gemma.web.controller.common.description.bibref

ubic.gemma.web.controller.common.rss - package ubic.gemma.web.controller.common.rss

ubic.gemma.web.controller.diff - package ubic.gemma.web.controller.diff

ubic.gemma.web.controller.expression.arrayDesign - package ubic.gemma.web.controller.expression.arrayDesign

ubic.gemma.web.controller.expression.experiment - package ubic.gemma.web.controller.expression.experiment

ubic.gemma.web.controller.job - package ubic.gemma.web.controller.job

ubic.gemma.web.controller.ontology - package ubic.gemma.web.controller.ontology

ubic.gemma.web.controller.security - package ubic.gemma.web.controller.security

ubic.gemma.web.util - package ubic.gemma.web.util

ubic.gemma.web.util.dwr - package ubic.gemma.web.util.dwr

Utilities for testing DWR endpoints.

ubic.gemma.web.util.upload - package ubic.gemma.web.util.upload

V

value(Object) - Method in class ubic.gemma.web.util.dwr.DwrCallbackMatchers

value(Matcher) - Method in class ubic.gemma.web.util.dwr.DwrCallbackMatchers

W

webEntityUrlBuilder(ServletContext) - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

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All Classes and Interfaces|All Packages|Constant Field Values