Serialized Form

Package ubic.gemma.rest

Class ubic.gemma.rest.DatasetsWebService.AnnotationWithUsageStatisticsValueObject

class AnnotationWithUsageStatisticsValueObject extends ubic.gemma.model.common.description.AnnotationValueObject implements Serializable

Serialized Fields

numberOfExpressionExperiments

Long numberOfExpressionExperiments

Number of times the characteristic is mentioned among matching datasets.

parentTerms

Set<DatasetsWebService.OntologyTermValueObject> parentTerms

URIs of parent terms, or null if excluded.

Class ubic.gemma.rest.DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject

class ArrayDesignWithUsageStatisticsValueObject extends ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject implements Serializable

Serialized Fields

numberOfExpressionExperimentsForTechnologyType

Long numberOfExpressionExperimentsForTechnologyType

Class ubic.gemma.rest.DatasetsWebService.DifferentialExpressionAnalysisResultByGeneValueObject

class DifferentialExpressionAnalysisResultByGeneValueObject extends ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResultValueObject implements Serializable

Serialized Fields

baseline

ubic.gemma.model.expression.experiment.FactorValueBasicValueObject baseline

experimentAnalyzedId

Long experimentAnalyzedId

The ID of the experiment analyzed which is either an ExpressionExperiment or an ExpressionExperimentSubSet.

resultSetId

Long resultSetId

The result set ID to which this result belong.

secondBaseline

ubic.gemma.model.expression.experiment.FactorValueBasicValueObject secondBaseline

sourceExperimentId

Long sourceExperimentId

The ID of the source experiment, which differs only if this result is from a subset. This is always referring to an ExpressionExperiment.

Class ubic.gemma.rest.DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject

class ExpressionExperimentSubsetWithFactorValuesObject extends ubic.gemma.model.expression.experiment.ExpressionExperimentSubsetValueObject implements Serializable

Serialized Fields

factorValues

List<ubic.gemma.model.expression.experiment.FactorValueBasicValueObject> factorValues

Class ubic.gemma.rest.DatasetsWebService.ExpressionExperimentSubSetWithGroupsValueObject

class ExpressionExperimentSubSetWithGroupsValueObject extends ubic.gemma.model.expression.experiment.ExpressionExperimentSubsetValueObject implements Serializable

Serialized Fields

subSetGroupIds

List<Long> subSetGroupIds

Class ubic.gemma.rest.DatasetsWebService.ExpressionExperimentWithSearchResultValueObject

class ExpressionExperimentWithSearchResultValueObject extends ubic.gemma.model.expression.experiment.ExpressionExperimentValueObject implements Serializable

Serialized Fields

searchResult

SearchWebService.SearchResultValueObject<ubic.gemma.model.expression.experiment.ExpressionExperimentValueObject> searchResult

Class ubic.gemma.rest.DatasetsWebService.TaxonWithUsageStatisticsValueObject

class TaxonWithUsageStatisticsValueObject extends ubic.gemma.model.genome.TaxonValueObject implements Serializable

Serialized Fields

numberOfExpressionExperiments

Long numberOfExpressionExperiments

Package ubic.gemma.rest.serializers

Class ubic.gemma.rest.serializers.AbstractFactorValueValueObjectSerializer

class AbstractFactorValueValueObjectSerializer extends com.fasterxml.jackson.databind.ser.std.StdSerializer<T extends ubic.gemma.model.expression.experiment.AbstractFactorValueValueObject> implements Serializable

Class ubic.gemma.rest.serializers.FactorValueBasicValueObjectSerializer

class FactorValueBasicValueObjectSerializer extends AbstractFactorValueValueObjectSerializer<ubic.gemma.model.expression.experiment.FactorValueBasicValueObject> implements Serializable

Class ubic.gemma.rest.serializers.FactorValueValueObjectSerializer

class FactorValueValueObjectSerializer extends AbstractFactorValueValueObjectSerializer<ubic.gemma.model.expression.experiment.FactorValueValueObject> implements Serializable

Package ubic.gemma.rest.util

Exception Class ubic.gemma.rest.util.EntityNotFoundException

class EntityNotFoundException extends Exception implements Serializable

Exception Class ubic.gemma.rest.util.MalformedArgException

class MalformedArgException extends javax.ws.rs.BadRequestException implements Serializable