Package ubic.gemma.web.controller.expression.designElement

Class CompositeSequenceController

java.lang.Object

ubic.gemma.web.controller.expression.designElement.CompositeSequenceController

@Controller
@RequestMapping("/compositeSequence")
public class CompositeSequenceController
extends Object

Author:

joseph, paul

Field Summary

Fields

Modifier and Type	Field	Description
protected final org.apache.commons.logging.Log	log
protected org.springframework.context.MessageSource	messageSource
protected MessageUtil	messageUtil

Constructor Summary

Constructors

Constructor	Description
CompositeSequenceController()

Method Summary

Modifier and Type	Method	Description
org.springframework.web.servlet.ModelAndView	filter(String filter, String arid)
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	getCsSummaries(Collection<Long> ids)	Exposed for AJAX calls (Probe browser) FIXME can probably remove soon since we should use getGeneCsSummaries? Might be another use for this
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	getGeneCsSummaries(Long geneId)	Exposed for AJAX calls (Elements tab on gene details page)
Collection<ubic.gemma.model.analysis.sequence.GeneMappingSummary>	getGeneMappingSummary(EntityDelegator<ubic.gemma.model.expression.designElement.CompositeSequence> csd)	Exposed for AJAX calls.
void	initBinder(org.springframework.web.bind.WebDataBinder binder)
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	search(String searchString, String arrayDesignId)
org.springframework.web.servlet.ModelAndView	show(Long id)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

log

protected final org.apache.commons.logging.Log log

messageSource

@Autowired
protected org.springframework.context.MessageSource messageSource

messageUtil

@Autowired
protected MessageUtil messageUtil

Constructor Details

CompositeSequenceController

public CompositeSequenceController()

Method Details

filter

@RequestMapping(value="/filter.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView filter(@RequestParam("filter")
 String filter,
 @RequestParam("arid")
 String arid)

getCsSummaries

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> getCsSummaries(Collection<Long> ids)

Exposed for AJAX calls (Probe browser) FIXME can probably remove soon since we should use getGeneCsSummaries? Might be another use for this

getGeneCsSummaries

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> getGeneCsSummaries(Long geneId)

Exposed for AJAX calls (Elements tab on gene details page)

getGeneMappingSummary

public Collection<ubic.gemma.model.analysis.sequence.GeneMappingSummary> getGeneMappingSummary(EntityDelegator<ubic.gemma.model.expression.designElement.CompositeSequence> csd)

Exposed for AJAX calls.

initBinder

@InitBinder
public void initBinder(org.springframework.web.bind.WebDataBinder binder)

search

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> search(String searchString,
 String arrayDesignId)
                                                                                     throws ubic.gemma.core.search.SearchException

Throws:

ubic.gemma.core.search.SearchException

show

@RequestMapping(value="/show.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView show(@RequestParam("id")
 Long id)