Package ubic.gemma.model.expression.bioAssayData

Class RawExpressionDataVector

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.expression.bioAssayData.DataVector

ubic.gemma.model.expression.bioAssayData.DesignElementDataVector

ubic.gemma.model.expression.bioAssayData.BulkExpressionDataVector

ubic.gemma.model.expression.bioAssayData.RawExpressionDataVector

All Implemented Interfaces:

Identifiable

public class RawExpressionDataVector
extends BulkExpressionDataVector

Data for one design element, across one or more bioassays, for a single quantitation type. For example, the "expression profile" for a probe (gene) across a set of samples

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	RawExpressionDataVector.Factory

Constructor Summary

Constructors

Constructor	Description
RawExpressionDataVector()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
int[]	getNumberOfCells()	Obtain the number of cells that were used to compute each value in this data vector, or null if now known/available.
int	hashCode()	Returns a hash code based on this entity's identifiers.
void	setNumberOfCells(int[] numberOfCells)

Methods inherited from class ubic.gemma.model.expression.bioAssayData.BulkExpressionDataVector

getBioAssayDimension, getOriginalDesignElement, setBioAssayDimension, toString

Methods inherited from class ubic.gemma.model.expression.bioAssayData.DesignElementDataVector

getDesignElement, setDesignElement

Methods inherited from class ubic.gemma.model.expression.bioAssayData.DataVector

getData, getDataAsBooleans, getDataAsBuffer, getDataAsChars, getDataAsDoubleBuffer, getDataAsDoubles, getDataAsFloatBuffer, getDataAsFloats, getDataAsIntBuffer, getDataAsInts, getDataAsLongBuffer, getDataAsLongs, getDataAsObjects, getDataAsStrings, getDataAsTabbedStrings, getExpressionExperiment, getQuantitationType, setData, setDataAsBooleans, setDataAsChars, setDataAsDoubles, setDataAsFloats, setDataAsInts, setDataAsLongs, setDataAsObjects, setDataAsStrings, setDataAsTabbedStrings, setExpressionExperiment, setQuantitationType

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

RawExpressionDataVector

public RawExpressionDataVector()

Method Details

getNumberOfCells

@Nullable
public int[] getNumberOfCells()

Description copied from class: BulkExpressionDataVector

Obtain the number of cells that were used to compute each value in this data vector, or null if now known/available.

Specified by:

getNumberOfCells in class BulkExpressionDataVector

setNumberOfCells

public void setNumberOfCells(@Nullable
 int[] numberOfCells)

Specified by:

setNumberOfCells in class BulkExpressionDataVector

hashCode

public int hashCode()

Description copied from class: DataVector

Returns a hash code based on this entity's identifiers.

Overrides:

hashCode in class DesignElementDataVector

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable