Package ubic.gemma.core.loader.genome

Class SimpleFastaCmdTest

java.lang.Object

ubic.gemma.core.loader.genome.SimpleFastaCmdTest

public class SimpleFastaCmdTest
extends Object

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
static final String	FASTA_CMD_CONFIG_NAME
static final String	FASTA_CMD_EXE

Constructor Summary

Constructors

Constructor	Description
SimpleFastaCmdTest()

Method Summary

Modifier and Type	Method	Description
static void	checkFastaCmdExecutableExists()
void	testGetMultiple()
void	testGetMultipleAcc()
void	testGetMultipleAccSomeNotFound()
void	testGetSingle()
void	testGetSingleAcc()
void	testGetSingleAccNotFound()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

FASTA_CMD_CONFIG_NAME

public static final String FASTA_CMD_CONFIG_NAME

See Also:

• Constant Field Values

FASTA_CMD_EXE

public static final String FASTA_CMD_EXE

Constructor Details

SimpleFastaCmdTest

public SimpleFastaCmdTest()

Method Details

checkFastaCmdExecutableExists

public static void checkFastaCmdExecutableExists()
                                          throws URISyntaxException

Throws:

URISyntaxException

testGetMultiple

public void testGetMultiple()

testGetMultipleAcc

public void testGetMultipleAcc()

testGetMultipleAccSomeNotFound

public void testGetMultipleAccSomeNotFound()

testGetSingle

public void testGetSingle()

testGetSingleAcc

public void testGetSingleAcc()

testGetSingleAccNotFound

public void testGetSingleAccNotFound()