Package ubic.gemma.core.loader.expression.geo

Class AbstractGeoServiceTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseTest

ubic.gemma.core.util.test.BaseIntegrationTest

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

Direct Known Subclasses:

ArrayDesignSequenceProcessorTest, BaselineDetectionTest, BatchInfoPopulationServiceIntegrationTest, CompositeSequenceGeneMapperServiceTest, ContinuousVariableDiffExTest, DataUpdaterTest, DifferentialExpressionAnalyzerServiceTest, DiffExMetaAnalyzerServiceTest, DiffExTest, DiffExWithInvalidInteraction2Test, DiffExWithInvalidInteractionTest, ExonArrayDataAddIntegrationTest, ExperimentalDesignWriterTest, ExpressionExperimentBatchCorrectionServiceTest, ExpressionExperimentPlatformSwitchTest, GeoDatasetServiceTest, GeoPlatformServiceTest, LowVarianceDataTest, MeanVarianceServiceTest, ProcessedExpressionDataCreateServiceTest, ProcessedExpressionDataVectorServiceTest, RawAndProcessedExpressionDataVectorServiceGeoTest, RNASeqBatchInfoPopulationTest, SubsettedAnalysis2Test, SubsettedAnalysis3Test, SVDServiceImplTest, TwoChannelExpressionDataDoubleMatrixTest, TwoWayAnovaWithInteractionsTest2, VectorMergingServiceTest

public abstract class AbstractGeoServiceTest
extends BaseSpringContextTest

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
AbstractGeoServiceTest()

Method Summary

Modifier and Type	Method	Description
protected String	getTestFileBasePath()
protected String	getTestFileBasePath(String subPath)

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class ubic.gemma.core.util.test.BaseIntegrationTest

setUpAuthentication, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AbstractGeoServiceTest

public AbstractGeoServiceTest()

Method Details

getTestFileBasePath

protected String getTestFileBasePath()
                              throws URISyntaxException

Throws:

URISyntaxException

getTestFileBasePath

protected String getTestFileBasePath(String subPath)
                              throws URISyntaxException

Throws:

URISyntaxException