Package ubic.gemma.core.analysis.expression.diff
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package ubic.gemma.core.analysis.expression.diff
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ClassesClassDescriptionTests of ANCOVA: using linear models with mixtures of fixed level and continuous parameters.Other tests can extend this class if they want an expression experiment with complete block design and biological replicates.This is a test that requires complex setup: loading several data sets, information on genes, array design annotations, conducting differential expression, and finally the meta-analysis.Tests added to check various cases of differential expression analysis.for bug 3927Test based on GSE19480, see bug 3177Tests the one way anova analyzer.This test covers subset analysis with pre-existing EE subset structure.See test/data/stat-tests/README.txt for R code.Tests the two way anova analyzer with interactions.Test based on GSE8441Tests the two way anova analyzer.