Uses of Interface
ubic.gemma.persistence.service.BaseImmutableService

Packages that use BaseImmutableService

Package	Description
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis
ubic.gemma.persistence.service.analysis.expression.coexpression
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.association
ubic.gemma.persistence.service.blacklist	Service for managing blacklisted entities.
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.common.protocol
ubic.gemma.persistence.service.common.quantitationtype
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis
ubic.gemma.persistence.service.genome.taxon

Uses of BaseImmutableService in ubic.gemma.persistence.service

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service

Modifier and Type	Interface	Description
interface	BaseService<O extends Identifiable>	Interface that supports basic CRUD operations.

Classes in ubic.gemma.persistence.service that implement BaseImmutableService

Modifier and Type	Class	Description
class	AbstractFilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base implementation for FilteringVoEnabledService.
class	AbstractService<O extends Identifiable>	Base for all services handling DAO access.
class	AbstractVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.

Uses of BaseImmutableService in ubic.gemma.persistence.service.analysis

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.analysis

Modifier and Type	Interface	Description
interface	AnalysisService<T extends Analysis>	Provides basic services for dealing with analyses

Uses of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.coexpression

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.coexpression

Modifier and Type	Interface	Description
interface	CoexpressionAnalysisService	Deals with the Analysis objects for Coexpression - not the coexpression results themselves.

Classes in ubic.gemma.persistence.service.analysis.expression.coexpression that implement BaseImmutableService

Modifier and Type	Class	Description
class	CoexpressionAnalysisServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.diff

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Interface	Description
interface	DifferentialExpressionAnalysisService
interface	GeneDiffExMetaAnalysisService

Classes in ubic.gemma.persistence.service.analysis.expression.diff that implement BaseImmutableService

Modifier and Type	Class	Description
class	DifferentialExpressionAnalysisServiceImpl
class	DifferentialExpressionResultServiceImpl
class	ExpressionAnalysisResultSetServiceImpl
class	GeneDiffExMetaAnalysisServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.pca

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.analysis.expression.pca

Modifier and Type	Interface	Description
interface	PrincipalComponentAnalysisService

Classes in ubic.gemma.persistence.service.analysis.expression.pca that implement BaseImmutableService

Modifier and Type	Class	Description
class	PrincipalComponentAnalysisServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.association

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.association

Modifier and Type	Interface	Description
interface	Gene2GOAssociationService

Classes in ubic.gemma.persistence.service.association that implement BaseImmutableService

Modifier and Type	Class	Description
class	Gene2GOAssociationServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.blacklist

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.blacklist

Modifier and Type	Interface	Description
interface	BlacklistedEntityService

Classes in ubic.gemma.persistence.service.blacklist that implement BaseImmutableService

Modifier and Type	Class	Description
class	BlacklistedEntityServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.common.auditAndSecurity

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Interface	Description
interface	AuditTrailService	Create and manipulate audit trails.
interface	ContactService
interface	SecurableBaseImmutableService<C extends Securable>
interface	SecurableBaseService<C extends Securable>	A base service for securable entities.

Classes in ubic.gemma.persistence.service.common.auditAndSecurity that implement BaseImmutableService

Modifier and Type	Class	Description
class	AuditTrailServiceImpl
class	ContactServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.common.description

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.common.description

Modifier and Type	Interface	Description
interface	BibliographicReferenceService
interface	CharacteristicService
interface	DatabaseEntryService
interface	ExternalDatabaseService

Classes in ubic.gemma.persistence.service.common.description that implement BaseImmutableService

Modifier and Type	Class	Description
class	BibliographicReferenceServiceImpl	Implementation of BibliographicReferenceService.
class	CharacteristicServiceImpl
class	DatabaseEntryServiceImpl	Spring Service base class for DatabaseEntryService, provides access to all services and entities referenced by this service.
class	ExternalDatabaseServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.common.protocol

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.common.protocol

Modifier and Type	Interface	Description
interface	ProtocolService

Classes in ubic.gemma.persistence.service.common.protocol that implement BaseImmutableService

Modifier and Type	Class	Description
class	ProtocolServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.common.quantitationtype

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.common.quantitationtype

Modifier and Type	Interface	Description
interface	QuantitationTypeService

Classes in ubic.gemma.persistence.service.common.quantitationtype that implement BaseImmutableService

Modifier and Type	Class	Description
class	QuantitationTypeServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.arrayDesign

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.arrayDesign

Modifier and Type	Interface	Description
interface	ArrayDesignService

Classes in ubic.gemma.persistence.service.expression.arrayDesign that implement BaseImmutableService

Modifier and Type	Class	Description
class	ArrayDesignServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.bioAssay

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.bioAssay

Modifier and Type	Interface	Description
interface	BioAssayService

Classes in ubic.gemma.persistence.service.expression.bioAssay that implement BaseImmutableService

Modifier and Type	Class	Description
class	BioAssayServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.bioAssayData

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.bioAssayData

Modifier and Type	Interface	Description
interface	BioAssayDimensionService

Classes in ubic.gemma.persistence.service.expression.bioAssayData that implement BaseImmutableService

Modifier and Type	Class	Description
class	AbstractBulkExpressionDataVectorService<T extends BulkExpressionDataVector>
class	BioAssayDimensionServiceImpl	Spring Service base class for BioAssayDimensionService, provides access to all services and entities referenced by this service.
class	ProcessedExpressionDataVectorServiceImpl
class	RawAndProcessedExpressionDataVectorServiceImpl
class	RawExpressionDataVectorServiceImpl	Provides methods that can be applied to both RawExpressionDataVector and ProcessedExpressionDataVector

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.biomaterial

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.biomaterial

Modifier and Type	Interface	Description
interface	BioMaterialService
interface	CompoundService

Classes in ubic.gemma.persistence.service.expression.biomaterial that implement BaseImmutableService

Modifier and Type	Class	Description
class	BioMaterialServiceImpl
class	CompoundServiceImpl	Spring Service base class for CompoundService, provides access to all services and entities referenced by this service.

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.designElement

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.designElement

Modifier and Type	Interface	Description
interface	CompositeSequenceService

Classes in ubic.gemma.persistence.service.expression.designElement that implement BaseImmutableService

Modifier and Type	Class	Description
class	CompositeSequenceServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.expression.experiment

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Interface	Description
interface	ExperimentalDesignService
interface	ExperimentalFactorService
interface	ExpressionExperimentService
interface	ExpressionExperimentSetService
interface	ExpressionExperimentSubSetService
interface	FactorValueService

Classes in ubic.gemma.persistence.service.expression.experiment that implement BaseImmutableService

Modifier and Type	Class	Description
class	ExperimentalDesignServiceImpl	Spring Service base class for ubic.gemma.model.expression.experiment.ExperimentalDesignService, provides access to all services and entities referenced by this service.
class	ExperimentalFactorServiceImpl
class	ExpressionExperimentServiceImpl
class	ExpressionExperimentSetServiceImpl	Spring Service base class for ubic.gemma.model.analysis.expression.ExpressionExperimentSetService, provides access to all services and entities referenced by this service.
class	ExpressionExperimentSubSetServiceImpl
class	FactorValueServiceImpl	Spring Service base class for FactorValueService, provides access to all services and entities referenced by this service.
class	GeeqServiceImpl

Uses of BaseImmutableService in ubic.gemma.persistence.service.genome

Classes in ubic.gemma.persistence.service.genome that implement BaseImmutableService

Modifier and Type	Class	Description
class	ChromosomeServiceImpl	Spring Service base class for ChromosomeService, provides access to all services and entities referenced by this service.

Uses of BaseImmutableService in ubic.gemma.persistence.service.genome.biosequence

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.genome.biosequence

Modifier and Type	Interface	Description
interface	BioSequenceService

Classes in ubic.gemma.persistence.service.genome.biosequence that implement BaseImmutableService

Modifier and Type	Class	Description
class	BioSequenceServiceImpl	Spring Service base class for BioSequenceService, provides access to all services and entities referenced by this service.

Uses of BaseImmutableService in ubic.gemma.persistence.service.genome.gene

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.genome.gene

Modifier and Type	Interface	Description
interface	GeneProductService
interface	GeneService
interface	GeneSetService	Service for managing gene sets

Classes in ubic.gemma.persistence.service.genome.gene that implement BaseImmutableService

Modifier and Type	Class	Description
class	GeneProductServiceImpl
class	GeneServiceImpl
class	GeneSetServiceImpl	Service for managing gene sets

Uses of BaseImmutableService in ubic.gemma.persistence.service.genome.sequenceAnalysis

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.genome.sequenceAnalysis

Modifier and Type	Interface	Description
interface	AnnotationAssociationService
interface	BlatAssociationService
interface	BlatResultService

Classes in ubic.gemma.persistence.service.genome.sequenceAnalysis that implement BaseImmutableService

Modifier and Type	Class	Description
class	AnnotationAssociationServiceImpl
class	BlatAssociationServiceImpl	Spring Service base class for BlatAssociationService, provides access to all services and entities referenced by this service.
class	BlatResultServiceImpl	Spring Service base class for BlatResultService, provides access to all services and entities referenced by this service.

Uses of BaseImmutableService in ubic.gemma.persistence.service.genome.taxon

Subinterfaces of BaseImmutableService in ubic.gemma.persistence.service.genome.taxon

Modifier and Type	Interface	Description
interface	TaxonService

Classes in ubic.gemma.persistence.service.genome.taxon that implement BaseImmutableService

Modifier and Type	Class	Description
class	TaxonServiceImpl