Package ubic.gemma.model.analysis.expression.pca

Class ProbeLoading

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.analysis.expression.pca.ProbeLoading

All Implemented Interfaces:

Identifiable

public class ProbeLoading
extends AbstractIdentifiable

Only stored for some of the probes (e.g. the top ones)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	ProbeLoading.Factory

Constructor Summary

Constructors

Constructor	Description
ProbeLoading()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
Integer	getComponentNumber()
Double	getLoading()
Integer	getLoadingRank()
CompositeSequence	getProbe()
int	hashCode()	Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
void	setComponentNumber(Integer componentNumber)
void	setLoading(Double loading)
void	setLoadingRank(Integer loadingRank)
void	setProbe(CompositeSequence probe)

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ProbeLoading

public ProbeLoading()

Method Details

getProbe

public CompositeSequence getProbe()

setProbe

public void setProbe(CompositeSequence probe)

getComponentNumber

public Integer getComponentNumber()

Returns:

Which component this loading is for (the first component is number 1)

setComponentNumber

public void setComponentNumber(Integer componentNumber)

getLoading

public Double getLoading()

Returns:

The raw loading value from the SVD. This corresponds to the values in the left singular vector.

setLoading

public void setLoading(Double loading)

getLoadingRank

public Integer getLoadingRank()

Returns:

The rank of this loading among the ones which were stored for the component

setLoadingRank

public void setLoadingRank(Integer loadingRank)

hashCode

public int hashCode()

Description copied from class: AbstractIdentifiable

Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.

Specified by:

hashCode in class AbstractIdentifiable

Returns:

Returns a hash code based on this entity's identifiers.

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable

Returns:

true if the argument is an ProbeLoading instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.