Package ubic.gemma.core.ontology

Class FactorValueOntologyServiceImpl

java.lang.Object

ubic.gemma.core.ontology.FactorValueOntologyServiceImpl

All Implemented Interfaces:

FactorValueOntologyService

@Service
@ParametersAreNonnullByDefault
public class FactorValueOntologyServiceImpl
extends Object
implements FactorValueOntologyService

Constructor Summary

Constructors

Constructor	Description
FactorValueOntologyServiceImpl(FactorValueService factorValueService, EntityUrlBuilder entityUrlBuilder)

Method Summary

Modifier and Type	Method	Description
Set<OntologyIndividual>	getFactorValueAnnotations(String uri)	Obtain annotations belonging to the given URI representing a factor value.
Slice<OntologyIndividual>	getFactorValues(int offset, int limit)	Obtain all the factor value in the ontology.
Set<OntologyStatement>	getFactorValueStatements(String uri)	Obtain statements related to the given URI representing a factor value.
Collection<String>	getFactorValueUris()
Slice<String>	getFactorValueUris(int offset, int limit)	Obtain all the factor value URIs in the ontology.
OntologyIndividual	getIndividual(String uri)	Obtain an individual from the ontology by URI.
void	writeToRdf(Collection<String> uri, Writer writer)	Write multiple individuals represented by the given URIs to RDF.
void	writeToRdfIgnoreAcls(Collection<String> uri, Writer writer)	Write multiple individuals represented by the given URIs to RDF, ignoring ACLs.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FactorValueOntologyServiceImpl

@Autowired
public FactorValueOntologyServiceImpl(FactorValueService factorValueService,
 EntityUrlBuilder entityUrlBuilder)

Method Details

getIndividual

public OntologyIndividual getIndividual(String uri)

Description copied from interface: FactorValueOntologyService

Obtain an individual from the ontology by URI.

Specified by:

getIndividual in interface FactorValueOntologyService

getFactorValues

public Slice<OntologyIndividual> getFactorValues(int offset,
 int limit)

Description copied from interface: FactorValueOntologyService

Obtain all the factor value in the ontology.

Specified by:

getFactorValues in interface FactorValueOntologyService

getFactorValueUris

public Collection<String> getFactorValueUris()

Specified by:

getFactorValueUris in interface FactorValueOntologyService

getFactorValueUris

public Slice<String> getFactorValueUris(int offset,
 int limit)

Description copied from interface: FactorValueOntologyService

Obtain all the factor value URIs in the ontology.

Specified by:

getFactorValueUris in interface FactorValueOntologyService

getFactorValueAnnotations

public Set<OntologyIndividual> getFactorValueAnnotations(String uri)

Description copied from interface: FactorValueOntologyService

Obtain annotations belonging to the given URI representing a factor value.

Specified by:

getFactorValueAnnotations in interface FactorValueOntologyService

getFactorValueStatements

public Set<OntologyStatement> getFactorValueStatements(String uri)

Description copied from interface: FactorValueOntologyService

Obtain statements related to the given URI representing a factor value.

Specified by:

getFactorValueStatements in interface FactorValueOntologyService

writeToRdf

public void writeToRdf(Collection<String> uri,
 Writer writer)

Description copied from interface: FactorValueOntologyService

Write multiple individuals represented by the given URIs to RDF.

Specified by:

writeToRdf in interface FactorValueOntologyService

writeToRdfIgnoreAcls

public void writeToRdfIgnoreAcls(Collection<String> uri,
 Writer writer)

Description copied from interface: FactorValueOntologyService

Write multiple individuals represented by the given URIs to RDF, ignoring ACLs.

use this only if the FVs were prefiltered with FactorValueOntologyService.getFactorValueUris() or FactorValueOntologyService.getFactorValues(int, int)

Specified by:

writeToRdfIgnoreAcls in interface FactorValueOntologyService