Package ubic.gemma.apps
Class DeleteDiffExCli
- All Implemented Interfaces:
org.springframework.beans.factory.Aware,org.springframework.beans.factory.InitializingBean,org.springframework.context.ApplicationContextAware,org.springframework.context.EnvironmentAware,CLI
Delete differential expression analsyes on a per-experiment basis.
- Author:
- paul
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Nested Class Summary
Nested classes/interfaces inherited from class ubic.gemma.apps.ExpressionExperimentManipulatingCLI
ExpressionExperimentManipulatingCLI.ExpressionDataFileResultNested classes/interfaces inherited from interface ubic.gemma.cli.util.CLI
CLI.CommandGroup -
Field Summary
Fields inherited from class ubic.gemma.apps.ExpressionExperimentManipulatingCLI
auditEventService, auditTrailService, eeService, entityLocator, entityUrlBuilder, OUTPUT_DIR_OPTION, OUTPUT_FILE_OPTION, STANDARD_LOCATION_OPTION, STANDARD_OUTPUT_OPTIONFields inherited from class ubic.gemma.cli.util.AbstractAutoSeekingCLI
FORCE_OPTIONFields inherited from class ubic.gemma.cli.util.AbstractCLI
ABORTED, FAILURE, FAILURE_FROM_ERROR_OBJECTS, log, SUCCESS -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionA short memorable name for the command that can be used to locate this class.Obtain a short description for this command explaining what it does.protected voidProcess anExpressionExperiment.Methods inherited from class ubic.gemma.apps.ExpressionExperimentManipulatingCLI
addExpressionDataFileOptions, addExpressionDataFileOptions, addSingleExperimentAutoOption, addSingleExperimentEnumOption, addSingleExperimentOption, addSingleExperimentOption, buildExperimentOptions, buildOptions, doAuthenticatedWork, formatExperiment, getCommandGroup, getExpressionDataFileResult, getExpressionDataFileResult, isAbortOnError, noNeedToRun, postprocessExpressionExperiments, preprocessExpressionExperiments, processAllExpressionExperiments, processExperimentOptions, processExpressionExperiments, processOptions, readChangelogEntryFromConsole, refreshExpressionExperimentFromGemmaWeb, setAbortOnError, setAllIsLazy, setDefaultToAll, setSingleExperimentMode, setUseReferencesIfPossible, toBatchObjectMethods inherited from class ubic.gemma.cli.util.AbstractAutoSeekingCLI
addAutoOption, addAutoOption, addErrorObject, addErrorObject, addErrorObject, addForceOption, addForceOption, addLimitingDateOption, addSuccessObject, addSuccessObject, addWarningObject, addWarningObject, getAutoSeekEventType, getLimitingDate, isAutoSeek, isForce, setForceMethods inherited from class ubic.gemma.cli.util.AbstractAuthenticatedCLI
afterPropertiesSet, doWork, setAuthenticateAnonymously, setEnvironment, setRequireLoginMethods inherited from class ubic.gemma.cli.util.AbstractCLI
abort, addBatchOption, addErrorObject, addErrorObject, addErrorObject, addSuccessObject, addSuccessObject, addThreadsOption, addWarningObject, addWarningObject, allowPositionalArguments, awaitBatchExecutorService, executeCommand, getApplicationContext, getBatchTaskExecutor, getBatchTaskProgressReporter, getCliContext, getCommandAliases, getHelpFooter, getNumThreads, getOptions, getUsage, promptConfirmationOrAbort, setAllowPositionalArguments, setApplicationContext, setEstimatedMaxTasks, setReportFrequencyMillis
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Constructor Details
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DeleteDiffExCli
public DeleteDiffExCli()
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Method Details
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getCommandName
Description copied from interface:CLIA short memorable name for the command that can be used to locate this class.- Specified by:
getCommandNamein interfaceCLI- Overrides:
getCommandNamein classAbstractCLI- Returns:
- name; if null or blank, this will not be available as a shortcut command.
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getShortDesc
Description copied from interface:CLIObtain a short description for this command explaining what it does.- Specified by:
getShortDescin interfaceCLI- Overrides:
getShortDescin classAbstractCLI
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processExpressionExperiment
Description copied from class:ExpressionExperimentManipulatingCLIProcess anExpressionExperiment.- Overrides:
processExpressionExperimentin classExpressionExperimentManipulatingCLI
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