Package ubic.gemma.core.loader.util

Class TestUtils

java.lang.Object

ubic.gemma.core.loader.util.TestUtils

public class TestUtils
extends Object

Constructor Summary

Constructors

Constructor	Description
TestUtils()

Method Summary

Modifier and Type	Method	Description
static void	assertBAs(ubic.gemma.model.expression.experiment.ExpressionExperiment ee, ubic.gemma.model.expression.arrayDesign.ArrayDesign targetArrayDesign, String accession, int readCount)	Checks the BioAssays in the given EE match the given properties.
static boolean	LogNcbiError(org.apache.commons.logging.Log log, Exception e)	Checks whether the given Exception is a known NCBI error and if so, logs the error.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TestUtils

public TestUtils()

Method Detail

LogNcbiError

public static boolean LogNcbiError(org.apache.commons.logging.Log log,
                                   Exception e)

Checks whether the given Exception is a known NCBI error and if so, logs the error.

Parameters:

log - the log to use to log the error.

e - the exception to check for known errors.

Returns:

true, if the exception was handled by this method and logged, false otherwise.

assertBAs

public static void assertBAs(ubic.gemma.model.expression.experiment.ExpressionExperiment ee,
                             ubic.gemma.model.expression.arrayDesign.ArrayDesign targetArrayDesign,
                             String accession,
                             int readCount)

Checks the BioAssays in the given EE match the given properties. Sequence read is always asserted to be 36.

Parameters:

targetArrayDesign - the AD that the BAs should be using.

ee - the experiment to get the BAs from.

accession - the accession the BAs should have in their description.

readCount - the sequence read count.