Package ubic.gemma.persistence.service.maintenance

Interface TableMaintenanceUtil

All Known Implementing Classes:

TableMaintenanceUtilImpl

public interface TableMaintenanceUtil

Author:

paul

Field Summary

Fields

Modifier and Type	Field	Description
static String	EE2AD_QUERY_SPACE	Query space used by the EXPRESSION_EXPERIMENT2ARRAY_DESIGN table.
static String	EE2C_QUERY_SPACE	Query space used by the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.
static int	GENE2CS_BATCH_SIZE	Recommended batch size to use when retrieving entries from the GENE2CS table either by gene or design element.
static String	GENE2CS_QUERY_SPACE	Query space used by the GENE2CS table.

Method Summary

Modifier and Type	Method	Description
void	disableEmail()
void	evictEe2AdQueryCache()
void	evictEe2CQueryCache()
void	evictGene2CsQueryCache()
int	updateExpressionExperiment2ArrayDesignEntries(Date sinceLastUpdate)	Update the EXPRESSION_EXPERIMENT2_ARRAY_DESIGN table.
int	updateExpressionExperiment2CharacteristicEntries(Class<?> level, Date sinceLastUpdate, boolean truncate)	Update a specific level of the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.
int	updateExpressionExperiment2CharacteristicEntries(Date sinceLastUpdate, boolean truncate)	Update the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.
int	updateGene2CsEntries()	If necessary, update the GENE2CS table.
int	updateGene2CsEntries(boolean force)	Update the GENE2CS table.

Field Detail

GENE2CS_QUERY_SPACE

static final String GENE2CS_QUERY_SPACE

Query space used by the GENE2CS table.

You may also want to synchronize to ArrayDesign, CompositeSequence and Gene since entries in the GENE2CS table are removed in cascade.

See Also:

Constant Field Values

GENE2CS_BATCH_SIZE

static final int GENE2CS_BATCH_SIZE

Recommended batch size to use when retrieving entries from the GENE2CS table either by gene or design element.

See Also:

Constant Field Values

EE2C_QUERY_SPACE

static final String EE2C_QUERY_SPACE

Query space used by the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.

You may also want to synchronize to ExpressionExperiment and Characteristic since entries in the EE2C table are removed in cascade.

See Also:

Constant Field Values

EE2AD_QUERY_SPACE

static final String EE2AD_QUERY_SPACE

Query space used by the EXPRESSION_EXPERIMENT2ARRAY_DESIGN table.

You may also want to synchronize to ExpressionExperiment and ArrayDesign since entries in the EE2AD table are removed in cascade.

See Also:

Constant Field Values

Method Detail

updateGene2CsEntries

@Secured("GROUP_AGENT")
int updateGene2CsEntries()

If necessary, update the GENE2CS table.

updateGene2CsEntries

@Secured("GROUP_AGENT")
int updateGene2CsEntries(boolean force)

Update the GENE2CS table.

Parameters:

force - update the table even if no platforms has been modified since the last update

updateExpressionExperiment2CharacteristicEntries

@Secured("GROUP_AGENT")
int updateExpressionExperiment2CharacteristicEntries(@Nullable
                                                     Date sinceLastUpdate,
                                                     boolean truncate)

Update the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.

Returns:

the number of records that were created or updated

updateExpressionExperiment2CharacteristicEntries

@Secured("GROUP_AGENT")
int updateExpressionExperiment2CharacteristicEntries(Class<?> level,
                                                     @Nullable
                                                     Date sinceLastUpdate,
                                                     boolean truncate)

Update a specific level of the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.

Parameters:

level - the level to update which is either ExpressionExperiment, BioMaterial or ExperimentalDesign

Returns:

the number of records that were created or updated

updateExpressionExperiment2ArrayDesignEntries

@Secured("GROUP_AGENT")
int updateExpressionExperiment2ArrayDesignEntries(@Nullable
                                                  Date sinceLastUpdate)

Update the EXPRESSION_EXPERIMENT2_ARRAY_DESIGN table.

Returns:

the number of records that were created or updated

evictGene2CsQueryCache

@Secured("GROUP_ADMIN")
void evictGene2CsQueryCache()

evictEe2CQueryCache

@Secured("GROUP_ADMIN")
void evictEe2CQueryCache()

evictEe2AdQueryCache

@Secured("GROUP_ADMIN")
void evictEe2AdQueryCache()

disableEmail

@Secured("GROUP_ADMIN")
void disableEmail()