Package ubic.gemma.persistence.service.analysis.expression.diff

Interface GeneDiffExMetaAnalysisService

All Superinterfaces:

AnalysisService<GeneDifferentialExpressionMetaAnalysis>, BaseImmutableService<GeneDifferentialExpressionMetaAnalysis>, BaseReadOnlyService<GeneDifferentialExpressionMetaAnalysis>, BaseService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseImmutableService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseReadOnlyService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseService<GeneDifferentialExpressionMetaAnalysis>

All Known Implementing Classes:

GeneDiffExMetaAnalysisServiceImpl

public interface GeneDiffExMetaAnalysisService
extends AnalysisService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseService<GeneDifferentialExpressionMetaAnalysis>

Author:

Paul

Method Summary

Modifier and Type	Method	Description
BaseValueObject	delete(Long id)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByName(String name)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByTaxon(Taxon taxon)
Collection<IncludedResultSetInfoValueObject>	findIncludedResultSetsInfoById(long analysisId)
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject>	findMetaAnalyses(Collection<Long> metaAnalysisIds)
Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject>	findResultsById(long analysisId)

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, getElementClass

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService

find, findOrFail, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService

save, save, update, update

Method Detail

findByName

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_COLLECTION_READ"})
Collection<GeneDifferentialExpressionMetaAnalysis> findByName(String name)

findByTaxon

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_COLLECTION_READ"})
Collection<GeneDifferentialExpressionMetaAnalysis> findByTaxon(Taxon taxon)

findIncludedResultSetsInfoById

Collection<IncludedResultSetInfoValueObject> findIncludedResultSetsInfoById(long analysisId)

findMetaAnalyses

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_VALUE_OBJECT_COLLECTION_READ"})
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject> findMetaAnalyses(Collection<Long> metaAnalysisIds)

findResultsById

Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject> findResultsById(long analysisId)

delete

@Secured("GROUP_ADMIN")
BaseValueObject delete(Long id)