Package ubic.gemma.core.search.source

Class GeneOntologySearchSource

java.lang.Object

ubic.gemma.core.search.source.GeneOntologySearchSource

All Implemented Interfaces:

SearchSource

@Component
public class GeneOntologySearchSource
extends Object
implements SearchSource

GO-based search source.

This does not exactly fit the OntologySearchSource because it is specialized for the GeneOntologyService and uses higher-level method to retrieve GO-gene associations.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
GeneOntologySearchSource()

Method Summary

Modifier and Type	Method	Description
boolean	accepts(SearchSettings settings)	Indicate if this source accepts the given search settings.
Collection<SearchResult<Gene>>	searchGene(SearchSettings settings, SearchContext context)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.search.SearchSource

searchArrayDesign, searchBibliographicReference, searchBioSequence, searchBioSequenceAndGene, searchBlacklistedEntities, searchCompositeSequence, searchCompositeSequenceAndGene, searchExperimentSet, searchExpressionExperiment, searchGeneSet

Constructor Detail

GeneOntologySearchSource

public GeneOntologySearchSource()

Method Detail

accepts

public boolean accepts(SearchSettings settings)

Description copied from interface: SearchSource

Indicate if this source accepts the given search settings.

Specified by:

accepts in interface SearchSource

searchGene

public Collection<SearchResult<Gene>> searchGene(SearchSettings settings,
                                                 SearchContext context)
                                          throws SearchException

Specified by:

searchGene in interface SearchSource

Throws:

SearchException