CompositeSequenceGeneMapperServiceTest (Gemma 1.32.1-SNAPSHOT Test API)

java.lang.Object
- org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
- - ubic.gemma.core.util.test.BaseTest
  - - ubic.gemma.core.util.test.BaseIntegrationTest
    - - ubic.gemma.core.util.test.BaseSpringContextTest
      - ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest
        
        ubic.gemma.core.analysis.service.CompositeSequenceGeneMapperServiceTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware
```
public class CompositeSequenceGeneMapperServiceTest
extends AbstractGeoServiceTest
```
This test makes use of the ArrayDesignProbeMapperServiceImpl. These tests add array data and gene data to the database to be used for testing. GPL96.

Author:

keshav

Field Summary
- Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
  externalDatabaseService, log, persisterHelper, rule, taxonService, testHelper
- Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
  applicationContext, logger

Constructor Summary

Constructors
Constructor Description

CompositeSequenceGeneMapperServiceTest()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`cleanup()`
`void`	`setUp()`
`void`	`testGetCompositeSequencesByGeneId()`	Tests finding the composite sequences for a given gene id.
`void`	`testGetGenesForCompositeSequence()`	Tests finding all genes for a given composite sequence.

Methods inherited from class ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest
getTestFileBasePath, getTestFileBasePath

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class ubic.gemma.core.util.test.BaseIntegrationTest
setUpAuthentication, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
setApplicationContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CompositeSequenceGeneMapperServiceTest
```
public CompositeSequenceGeneMapperServiceTest()
```
- Method Detail
  - cleanup
```
public void cleanup()
```
  - setUp
```
public void setUp()
           throws Exception
```
    Throws:
    
    Exception
  - testGetCompositeSequencesByGeneId
```
public void testGetCompositeSequencesByGeneId()
```
    Tests finding the composite sequences for a given gene id.
  - testGetGenesForCompositeSequence
```
public void testGetGenesForCompositeSequence()
```
    Tests finding all genes for a given composite sequence.