Package ubic.gemma.core.analysis.preprocess

Class ExpressionDataSVDTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseTest

ubic.gemma.core.analysis.preprocess.ExpressionDataSVDTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
public class ExpressionDataSVDTest
extends BaseTest

Author:

paul

Field Summary

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
ExpressionDataSVDTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testEigenvalues()
void	testGetS()
void	testGetU()
void	testMatrixReconstruct()
void	testMatrixReconstructB()
void	testUMatrixAsExpressionData()
void	testUMatrixAsExpressionDataUnnormalized()
void	testVarianceFractions()
void	testWinnow()

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpressionDataSVDTest

public ExpressionDataSVDTest()

Method Detail

setUp

public void setUp()
           throws Exception

Throws:

Exception

testGetS

public void testGetS()

testGetU

public void testGetU()

testMatrixReconstruct

public void testMatrixReconstruct()

testEigenvalues

public void testEigenvalues()
                     throws ubic.gemma.core.analysis.preprocess.svd.SVDException

Throws:

ubic.gemma.core.analysis.preprocess.svd.SVDException

testVarianceFractions

public void testVarianceFractions()

testMatrixReconstructB

public void testMatrixReconstructB()
                            throws Exception

Throws:

Exception

testUMatrixAsExpressionData

public void testUMatrixAsExpressionData()
                                 throws ubic.gemma.core.analysis.preprocess.svd.SVDException

Throws:

ubic.gemma.core.analysis.preprocess.svd.SVDException

testUMatrixAsExpressionDataUnnormalized

public void testUMatrixAsExpressionDataUnnormalized()

testWinnow

public void testWinnow()