Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
baseCode baseCode 1.1.24-SNAPSHOT jar The Apache Software License, Version 2.0
colt colt 1.2.0 jar -
com.fasterxml.jackson.core jackson-annotations 2.18.2 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-core 2.18.2 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-databind 2.18.2 jar The Apache Software License, Version 2.0
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0
com.mysql mysql-connector-j 8.4.0 jar The GNU General Public License, v2 with Universal FOSS Exception, v1.0
com.zaxxer HikariCP 5.1.0 jar The Apache Software License, Version 2.0
commons-codec commons-codec 1.18.0 jar Apache-2.0
commons-fileupload commons-fileupload 1.5 jar Apache-2.0
commons-io commons-io 2.18.0 jar Apache-2.0
commons-logging commons-logging 1.3.5 jar Apache-2.0
commons-logging commons-logging-api 1.1 jar -
gemma gemma-core 1.32.0-SNAPSHOT jar The Apache Software License, Version 2.0
io.micrometer micrometer-core 1.13.11 jar The Apache Software License, Version 2.0
io.micrometer micrometer-registry-jmx 1.13.11 jar The Apache Software License, Version 2.0
io.swagger.core.v3 swagger-annotations 2.2.28 jar Apache License 2.0
io.swagger.core.v3 swagger-core 2.2.28 jar Apache License 2.0
io.swagger.core.v3 swagger-integration 2.2.28 jar Apache License 2.0
io.swagger.core.v3 swagger-jaxrs2 2.2.28 jar Apache License 2.0
io.swagger.core.v3 swagger-models 2.2.28 jar Apache License 2.0
javax.resource javax.resource-api 1.7.1 jar CDDL + GPLv2 with classpath exception
javax.ws.rs javax.ws.rs-api 2.0.1 jar CDDL 1.1GPL2 w/ CPE
net.sf.ehcache ehcache-core 2.4.3 jar The Apache Software License, Version 2.0
org.antlr antlr4-runtime 4.13.2 jar BSD-3-Clause
org.apache.ant ant 1.10.15 jar The Apache Software License, Version 2.0
org.apache.commons commons-collections4 4.4 jar Apache License, Version 2.0
org.apache.commons commons-compress 1.27.1 jar Apache-2.0
org.apache.commons commons-configuration2 2.11.0 jar Apache-2.0
org.apache.commons commons-lang3 3.14.0 jar Apache-2.0
org.apache.commons commons-pool2 2.12.1 jar Apache-2.0
org.apache.commons commons-text 1.13.0 jar Apache-2.0
org.apache.logging.log4j log4j-1.2-api 2.24.3 jar Apache-2.0
org.apache.logging.log4j log4j-core 2.24.3 jar Apache-2.0
org.apache.logging.log4j log4j-jcl 2.24.3 jar Apache-2.0
org.apache.logging.log4j log4j-jul 2.24.3 jar Apache-2.0
org.aspectj aspectjweaver 1.9.22.1 jar Eclipse Public License - v 2.0
org.glassfish.jersey.core jersey-server 2.25.1 jar CDDL+GPL License
org.glassfish.jersey.ext jersey-spring3 2.25.1 jar CDDL+GPL License
org.glassfish.jersey.media jersey-media-json-jackson 2.25.1 jar CDDL+GPL License
org.hibernate hibernate-core 4.2.21.Final jar GNU Lesser General Public License
org.jfree jfreechart 1.5.5 jar GNU Lesser General Public Licence
org.projectlombok lombok 1.18.36 jar The MIT License
org.springframework spring-beans 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context-support 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-core 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-jdbc 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-orm 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-tx 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-webmvc 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-acl 3.2.10.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-core 3.2.10.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-web 3.2.10.RELEASE jar The Apache Software License, Version 2.0
pavlab gemma-gsec 0.0.17 jar The Apache Software License, Version 2.0
xerces xercesImpl 2.12.2 jar The Apache Software License, Version 2.0
xml-apis xml-apis 1.4.01 jar The Apache Software License, Version 2.0The SAX LicenseThe W3C License

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
io.swagger.core.v3 swagger-jaxrs2-servlet-initializer-v2 2.2.28 jar Apache License 2.0
org.apache.logging.log4j log4j-slf4j-impl 2.24.3 jar Apache-2.0
org.dom4j dom4j 2.1.4 jar Plexus
org.glassfish.jersey.containers jersey-container-servlet 2.25.1 jar CDDL+GPL License
org.hibernate hibernate-ehcache 4.2.21.Final jar GNU Lesser General Public License
org.hibernate.common hibernate-commons-annotations 4.0.5.Final jar GNU Lesser General Public License
org.jboss.logging jboss-logging 3.6.1.Final jar Apache License 2.0
org.jboss.logging jboss-logging-annotations 3.0.4.Final jar Apache License 2.0
org.springframework spring-aop 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-aspects 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-expression 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-config 3.2.10.RELEASE jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Classifier Type Licenses
com.h2database h2 2.3.232 - jar MPL 2.0EPL 1.0
com.jayway.jsonpath json-path-assert 2.9.0 - jar The Apache Software License, Version 2.0
gemma gemma-core 1.32.0-SNAPSHOT tests test-jar The Apache Software License, Version 2.0
io.takari.junit takari-cpsuite 1.2.7 - jar The Eclipse Public License, Version 1.0
junit junit 4.13.2 - jar Eclipse Public License 1.0
org.assertj assertj-core 3.27.3 - jar Apache-2.0
org.glassfish.jersey.test-framework jersey-test-framework-core 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.test-framework.providers jersey-test-framework-provider-inmemory 2.25.1 - jar CDDL+GPL License
org.mockito mockito-core 5.15.2 - jar MIT
org.springframework spring-test 3.2.18.RELEASE - jar The Apache Software License, Version 2.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Classifier Type Licenses
RoSuDA JRIEngine 0.5-0 - jar -
antlr antlr 2.7.7 - jar BSD License
aopalliance aopalliance 1.0 - jar Public Domain
com.fasterxml.jackson.dataformat jackson-dataformat-yaml 2.18.2 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.datatype jackson-datatype-jsr310 2.18.2 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.jaxrs jackson-jaxrs-base 2.8.4 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.jaxrs jackson-jaxrs-json-provider 2.8.4 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.module jackson-module-jaxb-annotations 2.8.4 - jar The Apache Software License, Version 2.0
com.github.fommil jniloader 1.1 - jar LGPL
com.github.fommil.netlib all 1.1.2 - pom BSD 3 Clause
com.github.fommil.netlib native_ref-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib native_system-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-x86_64 1.1 natives jar BSD 3 Clause
com.google.protobuf protobuf-java 3.25.1 - jar BSD-3-Clause
com.googlecode.javaewah JavaEWAH 0.7.9 - jar Apache 2
com.googlecode.matrix-toolkits-java mtj 1.0.4 - jar GNU Lesser General Public License
commons-net commons-net 3.11.1 - jar Apache-2.0
concurrent concurrent 1.3.4 - jar Public domain, Sun Microsoystems
io.dropwizard.metrics metrics-core 4.2.30 - jar Apache License 2.0
io.dropwizard.metrics metrics-jmx 4.2.30 - jar Apache License 2.0
io.github.classgraph classgraph 4.8.179 - jar The MIT License (MIT)
io.micrometer micrometer-commons 1.13.11 - jar The Apache Software License, Version 2.0
io.micrometer micrometer-observation 1.13.11 - jar The Apache Software License, Version 2.0
jakarta-regexp jakarta-regexp 1.4 - jar -
javax.activation javax.activation-api 1.2.0 - jar CDDL/GPLv2+CE
javax.annotation javax.annotation-api 1.2 - jar CDDL + GPLv2 with classpath exception
javax.transaction javax.transaction-api 1.3 - jar CDDL + GPLv2 with classpath exception
javax.validation validation-api 1.1.0.Final - jar The Apache Software License, Version 2.0
javax.xml.bind jaxb-api 2.3.1 - jar CDDL 1.1GPL2 w/ CPE
net.sourceforge.f2j arpack_combined_all 0.1 - jar The BSD License
obo org.geneontology 1.002 - jar -
org.apache.ant ant-launcher 1.10.15 - jar The Apache Software License, Version 2.0
org.apache.commons commons-csv 1.13.0 - jar Apache-2.0
org.apache.commons commons-math3 3.6.1 - jar Apache License, Version 2.0
org.apache.jena jena-core 2.13.0 - jar The Apache Software License, Version 2.0
org.apache.jena jena-iri 1.1.2 - jar The Apache Software License, Version 2.0
org.apache.logging.log4j log4j-api 2.24.3 - jar Apache-2.0
org.apache.lucene lucene-analyzers 3.6.2 - jar Apache 2
org.apache.lucene lucene-core 3.6.2 - jar Apache 2
org.apache.lucene lucene-facet 3.6.2 - jar Apache 2
org.apache.lucene lucene-highlighter 3.6.2 - jar Apache 2
org.apache.lucene lucene-memory 3.6.2 - jar Apache 2
org.apache.lucene lucene-queries 3.6.2 - jar Apache 2
org.apache.velocity velocity-engine-core 2.4.1 - jar Apache-2.0
org.glassfish.hk2 class-model 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 config-types 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-api 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-config 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-core 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-locator 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-runlevel 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-utils 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 osgi-resource-locator 1.0.1 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 spring-bridge 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external aopalliance-repackaged 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external asm-all-repackaged 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external javax.inject 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.jersey.bundles.repackaged jersey-guava 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.containers jersey-container-servlet-core 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.core jersey-client 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.core jersey-common 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.ext jersey-entity-filtering 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.media jersey-media-jaxb 2.25.1 - jar CDDL+GPL License
org.hibernate hibernate-search-analyzers 4.4.6.Final - jar GNU Lesser General Public License
org.hibernate hibernate-search-engine 4.4.6.Final - jar GNU Lesser General Public License
org.hibernate hibernate-search-orm 4.4.6.Final - jar GNU Lesser General Public License
org.hibernate.javax.persistence hibernate-jpa-2.0-api 1.0.1.Final - jar null
org.jboss.spec.javax.transaction jboss-transaction-api_1.1_spec 1.0.1.Final - jar Common Development and Distribution LicenseGNU General Public License, Version 2 with the Classpath Exception
org.jvnet tiger-types 1.4 - jar -
org.rosuda.REngine REngine 2.1.0 - jar LGPL v2.1
org.slf4j slf4j-api 1.7.36 - jar MIT License
org.springframework spring-web 3.2.18.RELEASE - jar The Apache Software License, Version 2.0
org.springframework.retry spring-retry 1.0.3.RELEASE - jar Apache 2.0
org.yaml snakeyaml 2.3 - jar Apache License, Version 2.0

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
RoSuDA JRI 0.5-0 jar -
com.github.fommil.netlib core 1.1.2 jar BSD 3 Clause
com.sun.mail javax.mail 1.6.2 jar CDDL/GPLv2+CE
javax.activation activation 1.1 jar Common Development and Distribution License (CDDL) v1.0
org.hdrhistogram HdrHistogram 2.2.2 jar Public Domain, per Creative Commons CC0BSD-2-Clause
org.javassist javassist 3.30.2-GA jar MPL 1.1LGPL 2.1Apache License 2.0
org.latencyutils LatencyUtils 2.0.3 jar Public Domain, per Creative Commons CC0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
com.jayway.jsonpath json-path 2.9.0 jar The Apache Software License, Version 2.0
net.bytebuddy byte-buddy 1.15.11 jar Apache License, Version 2.0
net.bytebuddy byte-buddy-agent 1.15.11 jar Apache License, Version 2.0
net.minidev accessors-smart 2.5.0 jar The Apache Software License, Version 2.0
net.minidev json-smart 2.5.0 jar The Apache Software License, Version 2.0
org.hamcrest hamcrest 2.2 jar BSD License 3
org.hamcrest hamcrest-core 1.3 jar New BSD License
org.objenesis objenesis 3.3 jar Apache License, Version 2.0
org.ow2.asm asm 9.3 jar BSD-3-Clause

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupId ArtifactId Version Type Licenses
javax.servlet javax.servlet-api 3.1.0 jar CDDL + GPLv2 with classpath exception

system

The following is a list of system dependencies for this project. These dependencies are required to compile the application:

GroupId ArtifactId Version Type Licenses
org.hdf5group hdf5 1.12.3 jar -

Project Dependency Graph

Dependency Tree

Licenses

Unnamed: JPA 2.0 API

Apache 2.0: Spring Retry

The BSD License: Fortran to Java ARPACK

Eclipse Public License 1.0: JUnit

The Eclipse Public License, Version 1.0: takari-cpsuite

MIT License: SLF4J API Module

BSD License 3: Hamcrest

Plexus: dom4j

GPL2 w/ CPE: javax.ws.rs-api, jaxb-api

The GNU General Public License, v2 with Universal FOSS Exception, v1.0: MySQL Connector/J

New BSD License: Hamcrest Core

CDDL/GPLv2+CE: JavaBeans Activation Framework API jar, JavaMail API

Apache 2: JavaEWAH, Lucene Common Analyzers, Lucene Core, Lucene Facets, Lucene Highlighter, Lucene Memory, Lucene Queries

Public domain, Sun Microsoystems: Dough Lea's util.concurrent package

BSD 3 Clause: all, core, native_ref-java, native_system-java, netlib-native_ref-linux-armhf, netlib-native_ref-linux-i686, netlib-native_ref-linux-x86_64, netlib-native_ref-osx-x86_64, netlib-native_ref-win-i686, netlib-native_ref-win-x86_64, netlib-native_system-linux-armhf, netlib-native_system-linux-i686, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, netlib-native_system-win-i686, netlib-native_system-win-x86_64

Unknown: JRI, JRIEngine, Type arithmetic library for Java5, colt, jakarta-regexp

LGPL: JniLoader

Public Domain, per Creative Commons CC0: HdrHistogram, LatencyUtils

Apache License 2.0: JBoss Logging 3, JBoss Logging I18n Annotations, Javassist, Metrics Core, Metrics Integration with JMX, swagger-annotations, swagger-core, swagger-integration, swagger-jaxrs2, swagger-jaxrs2-servlet-initializer-v2, swagger-models

BSD License: AntLR Parser Generator

The MIT License: Project Lombok

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Apache-2.0: Apache Commons CSV, Apache Commons Codec, Apache Commons Compress, Apache Commons Configuration, Apache Commons FileUpload, Apache Commons IO, Apache Commons Lang, Apache Commons Logging, Apache Commons Net, Apache Commons Pool, Apache Commons Text, Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Commons Logging Bridge, Apache Log4j Core, Apache Log4j JUL Adapter, Apache Velocity - Engine, AssertJ Core, SLF4J 1 Binding for Log4j API

Apache License, Version 2.0: Apache Commons Collections, Apache Commons Math, Byte Buddy (without dependencies), Byte Buddy agent, Objenesis, SnakeYAML

GNU General Public License, Version 2 with the Classpath Exception: Java Transaction API

EPL 1.0: H2 Database Engine

MPL 1.1: Javassist

MPL 2.0: H2 Database Engine

CDDL 1.1: javax.ws.rs-api, jaxb-api

The SAX License: XML Commons External Components XML APIs

Common Development and Distribution License: Java Transaction API

BSD-3-Clause: ANTLR 4 Runtime, Protocol Buffers [Core], asm

BSD-2-Clause: HdrHistogram

LGPL v2.1: REngine Java interface to R

The W3C License: XML Commons External Components XML APIs

Public Domain: AOP alliance

GNU Lesser General Public License: A Hibernate O/RM Module, Hibernate Commons Annotations, Hibernate Search Analyzer Framework, Hibernate Search Engine, Hibernate Search ORM, Matrix Toolkits for Java

The MIT License (MIT): ClassGraph

LGPL 2.1: Javassist

MIT: mockito-core

CDDL + GPLv2 with classpath exception: ASM library repackaged as OSGi bundle, Class Model for Hk2, HK2 API module, HK2 Implementation Utilities, HK2 Spring Bridge, HK2 config types, HK2 configuration module, HK2 core module, HK2 module of HK2 itself, Java Servlet API, OSGi resource locator bundle - used by various API providers that rely on META-INF/services mechanism to locate providers., Run Level Service, ServiceLocator Default Implementation, aopalliance version 1.0 repackaged as a module, javax.annotation API, javax.inject:1 as OSGi bundle, javax.resource API, javax.transaction API

Eclipse Public License - v 2.0: AspectJ Weaver

GNU Lesser General Public Licence: JFreeChart

The Apache Software License, Version 2.0: ASM based accessors helper used by json-smart, Apache Ant Core, Apache Ant Launcher, Apache Jena - Core, Apache Jena - IRI, Bean Validation API, Ehcache Core, FindBugs-jsr305, Gemma Core, Gemma REST, HikariCP, JSON Small and Fast Parser, Jackson datatype: JSR310, Jackson module: JAXB-annotations, Jackson-JAXRS-JSON, Jackson-JAXRS-base, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, Spring AOP, Spring Aspects, Spring Beans, Spring Context, Spring Context Support, Spring Core, Spring Expression Language (SpEL), Spring JDBC, Spring Object/Relational Mapping, Spring TestContext Framework, Spring Transaction, Spring Web, Spring Web MVC, XML Commons External Components XML APIs, Xerces2-j, baseCode, gsec, jackson-databind, json-path, json-path-assert, micrometer-commons, micrometer-core, micrometer-observation, micrometer-registry-jmx, spring-security-acl, spring-security-config, spring-security-core, spring-security-web

CDDL+GPL License: jersey-container-servlet, jersey-container-servlet-core, jersey-core-client, jersey-core-common, jersey-core-server, jersey-ext-entity-filtering, jersey-media-jaxb, jersey-media-json-jackson, jersey-repackaged-guava, jersey-spring3, jersey-test-framework-core, jersey-test-framework-provider-inmemory

Dependency File Details

Filename Size Entries Classes Packages Java Version Debug Information Sealed
JRI-0.5-0.jar 71.8 kB 15 9 1 1.4 Yes No
JRIEngine-0.5-0.jar 9.7 kB 5 2 1 1.4 Yes No
antlr-2.7.7.jar 445.3 kB 239 224 12 1.2 Yes No
aopalliance-1.0.jar 4.5 kB 15 9 2 1.3 Yes No
baseCode-1.1.24-SNAPSHOT.jar 2.2 MB 294 253 26 1.8 Yes No
colt-1.2.0.jar 581.9 kB 623 593 24 1.2 No No
jackson-annotations-2.18.2.jar 78.5 kB 87 74 2 1.6 Yes No
jackson-core-2.18.2.jar 597.8 kB 293 - - - - No
   • Root - 246 211 14 1.8 Yes -
   • Versioned - 2 1 1 9 No -
   • Versioned - 12 3 1 11 Yes -
   • Versioned - 11 2 1 17 Yes -
   • Versioned - 11 2 1 21 Yes -
   • Versioned - 11 2 1 22 Yes -
jackson-databind-2.18.2.jar 1.7 MB 829 - - - - No
   • Root - 827 789 23 1.8 Yes -
   • Versioned - 2 1 1 9 No -
jackson-dataformat-yaml-2.18.2.jar 55.6 kB 43 - - - - No
   • Root - 41 20 3 1.8 Yes -
   • Versioned - 2 1 1 9 No -
jackson-datatype-jsr310-2.18.2.jar 132.7 kB 86 - - - - No
   • Root - 84 62 6 1.8 Yes -
   • Versioned - 2 1 1 9 No -
jackson-jaxrs-base-2.8.4.jar 30.2 kB 32 16 4 1.7 Yes No
jackson-jaxrs-json-provider-2.8.4.jar 15.8 kB 27 9 2 1.7 Yes No
jackson-module-jaxb-annotations-2.8.4.jar 34.6 kB 30 12 3 1.7 Yes No
jniloader-1.1.jar 8.7 kB 13 2 1 1.6 Yes No
all-1.1.2.pom 4.3 kB - - - - - -
core-1.1.2.jar 164.4 kB 17 6 1 1.6 Yes No
native_ref-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
native_system-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
netlib-native_ref-linux-armhf-1.1-natives.jar 1.2 MB 8 0 0 - - -
netlib-native_ref-linux-i686-1.1-natives.jar 1.5 MB 8 0 0 - - -
netlib-native_ref-linux-x86_64-1.1-natives.jar 1.7 MB 8 0 0 - - -
netlib-native_ref-osx-x86_64-1.1-natives.jar 1.8 MB 11 0 0 - - -
netlib-native_ref-win-i686-1.1-natives.jar 1.8 MB 11 0 0 - - -
netlib-native_ref-win-x86_64-1.1-natives.jar 2.3 MB 11 0 0 - - -
netlib-native_system-linux-armhf-1.1-natives.jar 310.9 kB 11 0 0 - - -
netlib-native_system-linux-i686-1.1-natives.jar 435.4 kB 11 0 0 - - -
netlib-native_system-linux-x86_64-1.1-natives.jar 458.6 kB 11 0 0 - - -
netlib-native_system-osx-x86_64-1.1-natives.jar 554 kB 11 0 0 - - -
netlib-native_system-win-i686-1.1-natives.jar 561.5 kB 11 0 0 - - -
netlib-native_system-win-x86_64-1.1-natives.jar 637.4 kB 11 0 0 - - -
jsr305-3.0.2.jar 19.9 kB 46 35 3 1.5 Yes No
protobuf-java-3.25.1.jar 1.9 MB 754 735 2 1.8 Yes No
JavaEWAH-0.7.9.jar 125.1 kB 81 69 3 1.6 Yes No
mtj-1.0.4.jar 269 kB 196 183 3 1.6 Yes No
h2-2.3.232.jar 2.7 MB 1060 - - - - No
   • Root - 1059 1054 58 11 Yes -
   • Versioned - 1 1 1 21 Yes -
json-path-2.9.0.jar 276.6 kB 221 203 13 1.8 Yes No
json-path-assert-2.9.0.jar 16.6 kB 22 13 4 1.8 Yes No
mysql-connector-j-8.4.0.jar 2.5 MB 1132 1078 31 1.8 Yes No
javax.mail-1.6.2.jar 659 kB 375 340 14 1.7 Yes No
HikariCP-5.1.0.jar 161.8 kB 93 76 9 11 Yes No
commons-codec-1.18.0.jar 373 kB 262 - - - - No
   • Root - 261 114 7 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-fileupload-1.5.jar 74.1 kB 74 56 6 1.6 Yes No
commons-io-2.18.0.jar 538.9 kB 398 - - - - No
   • Root - 397 370 15 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-logging-1.3.5.jar 73.7 kB 42 - - - - No
   • Root - 41 27 2 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-logging-api-1.1.jar 44.6 kB 29 20 2 1.1 Yes No
commons-net-3.11.1.jar 325.4 kB 230 - - - - No
   • Root - 229 197 20 1.8 Yes -
   • Versioned - 1 1 1 9 No -
concurrent-1.3.4.jar 189.3 kB 230 221 2 1.1 No No
gemma-core-1.32.0-SNAPSHOT.jar 3.8 MB 2142 1741 152 1.8 Yes No
test-classes 0.1 kB - - - - - -
metrics-core-4.2.30.jar 132.5 kB 115 105 1 1.8 Yes No
metrics-jmx-4.2.30.jar 21.8 kB 30 19 1 1.8 Yes No
classgraph-4.8.179.jar 576.1 kB 296 - - - - No
   • Root - 294 266 13 1.7 Yes -
   • Versioned - 2 1 1 9 No -
micrometer-commons-1.13.11.jar 47.5 kB 50 36 6 1.8 Yes No
micrometer-core-1.13.11.jar 862.7 kB 608 - - - - No
   • Root - 587 524 44 1.8 Yes -
   • Versioned - 21 14 1 1.8 Yes -
micrometer-observation-1.13.11.jar 71.9 kB 71 56 6 1.8 Yes No
micrometer-registry-jmx-1.13.11.jar 9.2 kB 11 3 1 1.8 Yes No
swagger-annotations-2.2.28.jar 48.2 kB 85 59 13 1.8 Yes No
swagger-core-2.2.28.jar 235.5 kB 140 121 6 1.8 Yes No
swagger-integration-2.2.28.jar 41.6 kB 43 28 2 1.8 Yes No
swagger-jaxrs2-2.2.28.jar 96.4 kB 52 33 6 1.8 Yes No
swagger-jaxrs2-servlet-initializer-v2-2.2.28.jar 10.9 kB 18 1 1 1.8 Yes No
swagger-models-2.2.28.jar 136 kB 94 68 13 1.8 Yes No
takari-cpsuite-1.2.7.jar 22.5 kB 32 20 1 1.7 Yes No
jakarta-regexp-1.4.jar 28.6 kB 22 17 1 1.1 No No
activation-1.1.jar 63 kB 50 38 3 1.4 Yes No
javax.activation-api-1.2.0.jar 56.7 kB 41 31 1 1.5 Yes No
javax.annotation-api-1.2.jar 26.4 kB 29 15 3 1.6 Yes No
javax.resource-api-1.7.1.jar 69.9 kB 111 89 6 1.7 Yes No
javax.servlet-api-3.1.0.jar 95.8 kB 103 79 4 1.7 Yes No
javax.transaction-api-1.3.jar 28 kB 30 19 1 1.7 Yes No
validation-api-1.1.0.Final.jar 63.8 kB 122 106 8 1.6 Yes No
javax.ws.rs-api-2.0.1.jar 115.5 kB 139 125 5 1.6 Yes No
jaxb-api-2.3.1.jar 128.1 kB 136 - - - - No
   • Root - 131 111 7 1.8 Yes -
   • Versioned - 5 1 1 9 No -
junit-4.13.2.jar 384.6 kB 389 350 32 1.5 Yes No
byte-buddy-1.15.11.jar 8.5 MB 5890 - - - - No
   • Root - 2950 2897 38 1.5 Yes -
   • Versioned - 2940 2898 39 1.8 Yes -
byte-buddy-agent-1.15.11.jar 365.4 kB 170 - - - - No
   • Root - 91 72 2 1.5 Yes -
   • Versioned - 79 73 3 1.8 Yes -
accessors-smart-2.5.0.jar 29.9 kB 24 13 2 1.8 Yes No
json-smart-2.5.0.jar 120.2 kB 107 93 5 1.8 Yes No
ehcache-core-2.4.3.jar 1 MB 801 732 57 1.5 Yes No
arpack_combined_all-0.1.jar 1.2 MB 926 915 6 1.4 Yes No
org.geneontology-1.002.jar 307.3 kB 276 256 14 1.4 Yes Yes
antlr4-runtime-4.13.2.jar 326.3 kB 232 215 7 1.8 Yes No
ant-1.10.15.jar 2.3 MB 1255 1171 62 1.8 Yes No
ant-launcher-1.10.15.jar 18.9 kB 14 4 1 1.8 Yes No
commons-collections4-4.4.jar 751.9 kB 555 524 19 1.8 Yes No
commons-compress-1.27.1.jar 1.1 MB 625 - - - - No
   • Root - 624 572 36 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-configuration2-2.11.0.jar 664.7 kB 421 - - - - No
   • Root - 420 388 18 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-csv-1.13.0.jar 59.3 kB 34 - - - - No
   • Root - 33 20 1 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-lang3-3.14.0.jar 658 kB 436 - - - - No
   • Root - 434 403 18 1.8 Yes -
   • Versioned - 2 1 1 9 No -
commons-math3-3.6.1.jar 2.2 MB 1402 1301 75 1.5 Yes No
commons-pool2-2.12.1.jar 152.3 kB 98 - - - - No
   • Root - 97 82 3 1.8 Yes -
   • Versioned - 1 1 1 9 No -
commons-text-1.13.0.jar 257.9 kB 185 - - - - No
   • Root - 184 164 8 1.8 Yes -
   • Versioned - 1 1 1 9 No -
jena-core-2.13.0.jar 1.5 MB 1167 1086 40 1.7 Yes No
jena-iri-1.1.2.jar 137.7 kB 75 60 2 1.7 Yes No
log4j-1.2-api-2.24.3.jar 356.4 kB 252 208 22 1.8 Yes No
log4j-api-2.24.3.jar 348.5 kB 247 - - - - No
   • Root - 236 209 11 1.8 Yes -
   • Versioned - 11 4 2 9 Yes -
log4j-core-2.24.3.jar 1.9 MB 1320 - - - - No
   • Root - 1303 1214 57 1.8 Yes -
   • Versioned - 17 7 4 9 Yes -
log4j-jcl-2.24.3.jar 13 kB 22 5 2 1.8 Yes No
log4j-jul-2.24.3.jar 31.1 kB 31 16 2 1.8 Yes No
log4j-slf4j-impl-2.24.3.jar 25.3 kB 31 14 4 1.8 Yes No
lucene-analyzers-3.6.2.jar 1.2 MB 396 302 52 1.5 Yes No
lucene-core-3.6.2.jar 1.5 MB 997 973 18 1.5 Yes No
lucene-facet-3.6.2.jar 295.7 kB 264 231 26 1.5 Yes No
lucene-highlighter-3.6.2.jar 89.2 kB 64 54 2 1.5 Yes No
lucene-memory-3.6.2.jar 29.8 kB 19 10 1 1.5 Yes No
lucene-queries-3.6.2.jar 47.4 kB 36 26 3 1.5 Yes No
velocity-engine-core-2.4.1.jar 515.7 kB 289 255 18 1.8 Yes No
aspectjweaver-1.9.22.1.jar 2.2 MB 1056 1002 37 1.8 Yes No
assertj-core-3.27.3.jar 1.4 MB 881 - - - - No
   • Root - 877 838 27 1.8 Yes -
   • Versioned - 4 1 1 9 No -
dom4j-2.1.4.jar 324.7 kB 201 184 14 1.8 Yes No
class-model-2.5.0-b32.jar 88 kB 88 74 3 1.6 Yes No
config-types-2.5.0-b32.jar 10 kB 21 7 1 1.6 Yes No
hk2-2.5.0-b32.jar 3.3 kB 7 0 0 - - -
hk2-api-2.5.0-b32.jar 185.8 kB 191 172 7 1.6 Yes No
hk2-config-2.5.0-b32.jar 206.4 kB 174 157 4 1.6 Yes No
hk2-core-2.5.0-b32.jar 117.5 kB 105 85 7 1.6 Yes No
hk2-locator-2.5.0-b32.jar 187.3 kB 114 98 3 1.6 Yes No
hk2-runlevel-2.5.0-b32.jar 58.1 kB 53 38 3 1.6 Yes No
hk2-utils-2.5.0-b32.jar 134.9 kB 115 90 8 1.6 Yes No
osgi-resource-locator-1.0.1.jar 20.2 kB 23 12 1 1.6 Yes No
spring-bridge-2.5.0-b32.jar 13.2 kB 23 9 2 1.6 Yes No
aopalliance-repackaged-2.5.0-b32.jar 14.8 kB 39 26 4 1.6 Yes No
asm-all-repackaged-2.5.0-b32.jar 832.4 kB 333 182 7 1.5 Yes No
javax.inject-2.5.0-b32.jar 6 kB 15 6 1 1.6 No No
jersey-guava-2.25.1.jar 971.3 kB 775 753 9 1.6 Yes No
jersey-container-servlet-2.25.1.jar 18.1 kB 25 6 3 1.7 Yes No
jersey-container-servlet-core-2.25.1.jar 66.1 kB 66 51 4 1.7 Yes No
jersey-client-2.25.1.jar 169 kB 129 113 5 1.6 Yes No
jersey-common-2.25.1.jar 715.9 kB 516 484 19 1.6 Yes No
jersey-server-2.25.1.jar 940.8 kB 715 666 26 1.7 Yes No
jersey-entity-filtering-2.25.1.jar 69.9 kB 72 57 3 1.7 Yes No
jersey-spring3-2.25.1.jar 23.1 kB 30 13 2 1.7 Yes No
jersey-media-jaxb-2.25.1.jar 72.8 kB 62 47 1 1.6 Yes No
jersey-media-json-jackson-2.25.1.jar 21.7 kB 29 15 2 1.7 Yes No
jersey-test-framework-core-2.25.1.jar 30 kB 34 22 2 1.7 Yes No
jersey-test-framework-provider-inmemory-2.25.1.jar 15.5 kB 23 9 1 1.7 Yes No
hamcrest-2.2.jar 123.4 kB 122 108 11 1.7 Yes No
hamcrest-core-1.3.jar 45 kB 52 45 3 1.5 Yes No
HdrHistogram-2.2.2.jar 177.2 kB 108 97 2 1.8 Yes No
hibernate-core-4.2.21.Final.jar 4.7 MB 3234 3024 171 1.6 Yes No
hibernate-ehcache-4.2.21.Final.jar 138.4 kB 71 58 6 1.6 Yes No
hibernate-search-analyzers-4.4.6.Final.jar 2.4 kB 7 0 0 - - -
hibernate-search-engine-4.4.6.Final.jar 939.2 kB 826 696 71 1.6 Yes No
hibernate-search-orm-4.4.6.Final.jar 127.2 kB 105 69 15 1.6 Yes No
hibernate-commons-annotations-4.0.5.Final.jar 75.3 kB 79 67 7 1.6 Yes No
hibernate-jpa-2.0-api-1.0.1.Final.jar 102.7 kB 190 176 4 1.5 Yes No
javassist-3.30.2-GA.jar 794.7 kB 450 426 17 1.8 Yes No
jboss-logging-3.6.1.Final.jar 61.9 kB 46 35 2 11 Yes No
jboss-logging-annotations-3.0.4.Final.jar 17.5 kB 39 27 2 11 Yes No
jboss-transaction-api_1.1_spec-1.0.1.Final.jar 25.2 kB 31 18 2 1.6 Yes No
jfreechart-1.5.5.jar 1.7 MB 787 692 41 1.8 Yes No
tiger-types-1.4.jar 17.5 kB 22 12 1 1.5 Yes No
LatencyUtils-2.0.3.jar 29.8 kB 31 22 1 1.6 Yes No
mockito-core-5.15.2.jar 710 kB 647 575 64 11 Yes No
objenesis-3.3.jar 49.4 kB 59 43 10 1.8 Yes No
asm-9.3.jar 122.2 kB 44 38 3 1.5 Yes No
lombok-1.18.36.jar 2.1 MB 1083 178 13 1.6 Yes No
REngine-2.1.0.jar 39 kB 43 33 1 1.4 Yes No
slf4j-api-1.7.36.jar 41.1 kB 46 34 4 1.5 Yes No
spring-aop-3.2.18.RELEASE.jar 339.1 kB 282 252 15 1.5 Yes No
spring-aspects-3.2.18.RELEASE.jar 51.4 kB 55 30 7 1.5 Yes No
spring-beans-3.2.18.RELEASE.jar 614.4 kB 401 358 14 1.5 Yes No
spring-context-3.2.18.RELEASE.jar 868.2 kB 737 633 67 1.5 Yes No
spring-context-support-3.2.18.RELEASE.jar 128.8 kB 97 76 10 1.5 Yes No
spring-core-3.2.18.RELEASE.jar 885.6 kB 686 648 32 1.5 Yes No
spring-expression-3.2.18.RELEASE.jar 196.3 kB 140 128 6 1.5 Yes No
spring-jdbc-3.2.18.RELEASE.jar 406.1 kB 328 296 18 1.5 Yes No
spring-orm-3.2.18.RELEASE.jar 385 kB 296 276 14 1.5 Yes No
spring-test-3.2.18.RELEASE.jar 458.3 kB 369 335 27 1.5 Yes No
spring-tx-3.2.18.RELEASE.jar 242.6 kB 233 197 20 1.5 Yes No
spring-web-3.2.18.RELEASE.jar 631.4 kB 490 442 35 1.5 Yes No
spring-webmvc-3.2.18.RELEASE.jar 645.1 kB 401 353 28 1.5 Yes No
spring-retry-1.0.3.RELEASE.jar 80.9 kB 100 81 10 1.5 Yes No
spring-security-acl-3.2.10.RELEASE.jar 82.8 kB 78 62 5 1.5 Yes No
spring-security-config-3.2.10.RELEASE.jar 404.8 kB 199 156 22 1.5 Yes No
spring-security-core-3.2.10.RELEASE.jar 369.6 kB 370 306 43 1.5 Yes No
spring-security-web-3.2.10.RELEASE.jar 347 kB 300 257 34 1.5 Yes No
snakeyaml-2.3.jar 342.2 kB 284 - - - - No
   • Root - 276 235 23 1.7 Yes -
   • Versioned - 8 3 2 9 Yes -
gemma-gsec-0.0.17.jar 111.7 kB 91 66 9 1.8 Yes No
xercesImpl-2.12.2.jar 1.4 MB 1045 962 40 1.7 No No
xml-apis-1.4.01.jar 220.5 kB 391 346 29 1.1 No No
Total Size Entries Classes Packages Java Version Debug Information Sealed
182 95.1 MB 53074 43817 2455 11 160 1
compile: 143 compile: 76.1 MB compile: 40593 compile: 35114 compile: 2020 11 compile: 122 compile: 1
runtime: 19 runtime: 3.6 MB runtime: 2232 runtime: 1896 runtime: 128 runtime: 19 -
provided: 1 provided: 95.8 kB provided: 103 provided: 79 provided: 4 provided: 1 -
test: 19 test: 15.3 MB test: 10146 test: 6728 test: 303 11 test: 18 -