Project Dependencies
compile
The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
runtime
The following is a list of runtime dependencies for this project. These dependencies are required to run the application:
GroupId | ArtifactId | Version | Type | Licenses |
---|---|---|---|---|
com.github.fommil.netlib | core | 1.1.2 | jar | BSD 3 Clause |
com.sun.mail | javax.mail | 1.6.2 | jar | CDDL/GPLv2+CE |
org.apache.logging.log4j | log4j-slf4j-impl | 2.24.3 | jar | Apache-2.0 |
org.dom4j | dom4j | 2.1.4 | jar | Plexus |
org.hibernate | hibernate-ehcache | 4.2.21.Final | jar | GNU Lesser General Public License |
org.hibernate.common | hibernate-commons-annotations | 4.0.5.Final | jar | GNU Lesser General Public License |
org.jboss.logging | jboss-logging | 3.6.1.Final | jar | Apache License 2.0 |
org.jboss.logging | jboss-logging-annotations | 3.0.4.Final | jar | Apache License 2.0 |
org.springframework | spring-aop | 3.2.18.RELEASE | jar | The Apache Software License, Version 2.0 |
org.springframework | spring-aspects | 3.2.18.RELEASE | jar | The Apache Software License, Version 2.0 |
org.springframework | spring-expression | 3.2.18.RELEASE | jar | The Apache Software License, Version 2.0 |
org.springframework.security | spring-security-config | 3.2.10.RELEASE | jar | The Apache Software License, Version 2.0 |
test
The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:
GroupId | ArtifactId | Version | Type | Licenses |
---|---|---|---|---|
com.h2database | h2 | 2.3.232 | jar | MPL 2.0EPL 1.0 |
io.takari.junit | takari-cpsuite | 1.2.7 | jar | The Eclipse Public License, Version 1.0 |
javax.servlet | javax.servlet-api | 4.0.1 | jar | CDDL + GPLv2 with classpath exception |
junit | junit | 4.13.2 | jar | Eclipse Public License 1.0 |
org.assertj | assertj-core | 3.27.3 | jar | Apache-2.0 |
org.mockito | mockito-core | 5.15.2 | jar | MIT |
org.springframework | spring-test | 3.2.18.RELEASE | jar | The Apache Software License, Version 2.0 |
org.springframework.security | spring-security-web | 3.2.10.RELEASE | jar | The Apache Software License, Version 2.0 |
system
The following is a list of system dependencies for this project. These dependencies are required to compile the application:
GroupId | ArtifactId | Version | Type | Licenses |
---|---|---|---|---|
org.hdf5group | hdf5 | 1.12.3 | jar | - |
Project Transitive Dependencies
The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.
compile
The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
GroupId | ArtifactId | Version | Classifier | Type | Licenses |
---|---|---|---|---|---|
RoSuDA | JRIEngine | 0.5-0 | - | jar | - |
antlr | antlr | 2.7.7 | - | jar | BSD License |
aopalliance | aopalliance | 1.0 | - | jar | Public Domain |
com.github.fommil | jniloader | 1.1 | - | jar | LGPL |
com.github.fommil.netlib | all | 1.1.2 | - | pom | BSD 3 Clause |
com.github.fommil.netlib | native_ref-java | 1.1 | - | jar | BSD 3 Clause |
com.github.fommil.netlib | native_system-java | 1.1 | - | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-linux-armhf | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-linux-i686 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-linux-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-osx-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-win-i686 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_ref-win-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-linux-armhf | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-linux-i686 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-linux-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-osx-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-win-i686 | 1.1 | natives | jar | BSD 3 Clause |
com.github.fommil.netlib | netlib-native_system-win-x86_64 | 1.1 | natives | jar | BSD 3 Clause |
com.google.protobuf | protobuf-java | 3.25.1 | - | jar | BSD-3-Clause |
com.opencsv | opencsv | 5.10 | - | jar | Apache 2 |
com.zaxxer | SparseBitSet | 1.3 | - | jar | The Apache Software License, Version 2.0 |
concurrent | concurrent | 1.3.4 | - | jar | Public domain, Sun Microsoystems |
io.dropwizard.metrics | metrics-core | 4.2.28 | - | jar | Apache License 2.0 |
io.dropwizard.metrics | metrics-jmx | 4.2.28 | - | jar | Apache License 2.0 |
io.micrometer | micrometer-commons | 1.13.6 | - | jar | The Apache Software License, Version 2.0 |
io.micrometer | micrometer-observation | 1.13.6 | - | jar | The Apache Software License, Version 2.0 |
jakarta-regexp | jakarta-regexp | 1.4 | - | jar | - |
javax.activation | javax.activation-api | 1.2.0 | - | jar | CDDL/GPLv2+CE |
javax.transaction | javax.transaction-api | 1.3 | - | jar | CDDL + GPLv2 with classpath exception |
net.sourceforge.f2j | arpack_combined_all | 0.1 | - | jar | The BSD License |
org.apache.ant | ant-launcher | 1.10.15 | - | jar | The Apache Software License, Version 2.0 |
org.apache.jena | jena-core | 2.13.0 | - | jar | The Apache Software License, Version 2.0 |
org.apache.jena | jena-iri | 1.1.2 | - | jar | The Apache Software License, Version 2.0 |
org.apache.logging.log4j | log4j-api | 2.24.3 | - | jar | Apache-2.0 |
org.apache.lucene | lucene-facet | 3.6.2 | - | jar | Apache 2 |
org.apache.lucene | lucene-memory | 3.6.2 | - | jar | Apache 2 |
org.apache.lucene | lucene-queries | 3.6.2 | - | jar | Apache 2 |
org.apache.poi | poi | 5.4.0 | - | jar | Apache License, Version 2.0 |
org.hibernate | hibernate-search-analyzers | 4.4.6.Final | - | jar | GNU Lesser General Public License |
org.hibernate | hibernate-search-engine | 4.4.6.Final | - | jar | GNU Lesser General Public License |
org.hibernate.javax.persistence | hibernate-jpa-2.0-api | 1.0.1.Final | - | jar | null |
org.jboss.spec.javax.transaction | jboss-transaction-api_1.1_spec | 1.0.1.Final | - | jar | Common Development and Distribution LicenseGNU General Public License, Version 2 with the Classpath Exception |
org.rosuda.REngine | REngine | 2.1.0 | - | jar | LGPL v2.1 |
org.slf4j | slf4j-api | 1.7.36 | - | jar | MIT License |
runtime
The following is a list of runtime dependencies for this project. These dependencies are required to run the application:
GroupId | ArtifactId | Version | Type | Licenses |
---|---|---|---|---|
RoSuDA | JRI | 0.5-0 | jar | - |
javax.activation | activation | 1.1 | jar | Common Development and Distribution License (CDDL) v1.0 |
org.hdrhistogram | HdrHistogram | 2.2.2 | jar | Public Domain, per Creative Commons CC0BSD-2-Clause |
org.javassist | javassist | 3.30.2-GA | jar | MPL 1.1LGPL 2.1Apache License 2.0 |
org.latencyutils | LatencyUtils | 2.0.3 | jar | Public Domain, per Creative Commons CC0 |
test
The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:
GroupId | ArtifactId | Version | Type | Licenses |
---|---|---|---|---|
net.bytebuddy | byte-buddy | 1.15.11 | jar | Apache License, Version 2.0 |
net.bytebuddy | byte-buddy-agent | 1.15.11 | jar | Apache License, Version 2.0 |
org.hamcrest | hamcrest-core | 1.3 | jar | New BSD License |
org.objenesis | objenesis | 3.3 | jar | Apache License, Version 2.0 |
org.springframework | spring-web | 3.2.18.RELEASE | jar | The Apache Software License, Version 2.0 |
Project Dependency Graph
Dependency Tree
- gemma:gemma-core:jar:1.32.0-SNAPSHOT
- org.springframework.retry:spring-retry:jar:1.0.3.RELEASE (compile)
- com.sun.mail:javax.mail:jar:1.6.2 (runtime)
- javax.activation:activation:jar:1.1 (runtime)
- javax.activation:activation:jar:1.1 (runtime)
- org.apache.velocity:velocity-engine-core:jar:2.4.1 (compile)
- org.slf4j:slf4j-api:jar:1.7.36 (compile)
- org.slf4j:slf4j-api:jar:1.7.36 (compile)
- org.apache.lucene:lucene-core:jar:3.6.2 (compile)
- org.apache.lucene:lucene-analyzers:jar:3.6.2 (compile)
- org.apache.lucene:lucene-highlighter:jar:3.6.2 (compile)
- org.apache.lucene:lucene-memory:jar:3.6.2 (compile)
- org.apache.lucene:lucene-queries:jar:3.6.2 (compile)
- jakarta-regexp:jakarta-regexp:jar:1.4 (compile)
- jakarta-regexp:jakarta-regexp:jar:1.4 (compile)
- org.apache.lucene:lucene-memory:jar:3.6.2 (compile)
- org.hibernate:hibernate-search-orm:jar:4.4.6.Final (compile)
- org.hibernate:hibernate-search-engine:jar:4.4.6.Final (compile)
- org.apache.lucene:lucene-facet:jar:3.6.2 (compile)
- org.apache.lucene:lucene-facet:jar:3.6.2 (compile)
- org.hibernate:hibernate-search-analyzers:jar:4.4.6.Final (compile)
- org.hibernate:hibernate-search-engine:jar:4.4.6.Final (compile)
- org.apache.commons:commons-csv:jar:1.13.0 (compile)
- org.apache.commons:commons-math3:jar:3.6.1 (compile)
- commons-net:commons-net:jar:3.11.1 (compile)
- io.swagger.core.v3:swagger-annotations:jar:2.2.28 (compile)
- javax.xml.bind:jaxb-api:jar:2.3.1 (compile)
- javax.activation:javax.activation-api:jar:1.2.0 (compile)
- javax.activation:javax.activation-api:jar:1.2.0 (compile)
- obo:org.geneontology:jar:1.002 (compile)
- com.googlecode.javaewah:JavaEWAH:jar:0.7.9 (compile)
- jboss:jboss-ejb3x:jar:4.2.2.GA (compile)
- com.googlecode.matrix-toolkits-java:mtj:jar:1.0.4 (compile)
- com.github.fommil.netlib:all:pom:1.1.2 (compile)
- com.github.fommil.netlib:netlib-native_ref-osx-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:native_ref-java:jar:1.1 (compile)
- com.github.fommil:jniloader:jar:1.1 (compile)
- com.github.fommil:jniloader:jar:1.1 (compile)
- com.github.fommil.netlib:native_ref-java:jar:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-linux-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-linux-i686:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-win-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-win-i686:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-linux-armhf:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-osx-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:native_system-java:jar:1.1 (compile)
- com.github.fommil.netlib:native_system-java:jar:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-linux-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-linux-i686:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-linux-armhf:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-win-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_system-win-i686:jar:natives:1.1 (compile)
- com.github.fommil.netlib:netlib-native_ref-osx-x86_64:jar:natives:1.1 (compile)
- com.github.fommil.netlib:all:pom:1.1.2 (compile)
- com.github.fommil.netlib:core:jar:1.1.2 (runtime)
- net.sourceforge.f2j:arpack_combined_all:jar:0.1 (compile)
- net.sourceforge.f2j:arpack_combined_all:jar:0.1 (compile)
- org.hdf5group:hdf5:jar:1.12.3 (system)
- javax.servlet:javax.servlet-api:jar:4.0.1 (test)
- org.springframework.security:spring-security-web:jar:3.2.10.RELEASE (test)
- aopalliance:aopalliance:jar:1.0 (compile)
- org.springframework:spring-web:jar:3.2.18.RELEASE (test)
- aopalliance:aopalliance:jar:1.0 (compile)
- baseCode:baseCode:jar:1.1.24-SNAPSHOT (compile)
- org.apache.poi:poi:jar:5.4.0 (compile)
- com.zaxxer:SparseBitSet:jar:1.3 (compile)
- com.zaxxer:SparseBitSet:jar:1.3 (compile)
- org.rosuda.REngine:REngine:jar:2.1.0 (compile)
- RoSuDA:JRI:jar:0.5-0 (runtime)
- RoSuDA:JRIEngine:jar:0.5-0 (compile)
- org.apache.jena:jena-core:jar:2.13.0 (compile)
- org.apache.jena:jena-iri:jar:1.1.2 (compile)
- org.apache.jena:jena-iri:jar:1.1.2 (compile)
- com.opencsv:opencsv:jar:5.10 (compile)
- org.apache.poi:poi:jar:5.4.0 (compile)
- pavlab:gemma-gsec:jar:0.0.17 (compile)
- org.springframework:spring-core:jar:3.2.18.RELEASE (compile)
- org.springframework:spring-beans:jar:3.2.18.RELEASE (compile)
- org.springframework:spring-expression:jar:3.2.18.RELEASE (runtime)
- org.springframework:spring-context:jar:3.2.18.RELEASE (compile)
- org.springframework:spring-context-support:jar:3.2.18.RELEASE (compile)
- org.springframework:spring-aspects:jar:3.2.18.RELEASE (runtime)
- org.aspectj:aspectjweaver:jar:1.9.22.1 (compile)
- org.springframework:spring-aop:jar:3.2.18.RELEASE (runtime)
- org.springframework:spring-tx:jar:3.2.18.RELEASE (compile)
- org.springframework.security:spring-security-core:jar:3.2.10.RELEASE (compile)
- org.springframework.security:spring-security-acl:jar:3.2.10.RELEASE (compile)
- org.springframework.security:spring-security-config:jar:3.2.10.RELEASE (runtime)
- org.springframework:spring-jdbc:jar:3.2.18.RELEASE (compile)
- org.springframework:spring-orm:jar:3.2.18.RELEASE (compile)
- org.hibernate:hibernate-core:jar:4.2.21.Final (compile)
- antlr:antlr:jar:2.7.7 (compile)
- org.javassist:javassist:jar:3.30.2-GA (runtime)
- org.jboss.spec.javax.transaction:jboss-transaction-api_1.1_spec:jar:1.0.1.Final (compile)
- org.hibernate.javax.persistence:hibernate-jpa-2.0-api:jar:1.0.1.Final (compile)
- antlr:antlr:jar:2.7.7 (compile)
- org.hibernate.common:hibernate-commons-annotations:jar:4.0.5.Final (runtime)
- org.dom4j:dom4j:jar:2.1.4 (runtime)
- org.hibernate:hibernate-ehcache:jar:4.2.21.Final (runtime)
- org.jboss.logging:jboss-logging:jar:3.6.1.Final (runtime)
- org.jboss.logging:jboss-logging-annotations:jar:3.0.4.Final (runtime)
- com.mysql:mysql-connector-j:jar:8.4.0 (compile)
- com.google.protobuf:protobuf-java:jar:3.25.1 (compile)
- com.google.protobuf:protobuf-java:jar:3.25.1 (compile)
- com.zaxxer:HikariCP:jar:5.1.0 (compile)
- net.sf.ehcache:ehcache-core:jar:2.4.3 (compile)
- colt:colt:jar:1.2.0 (compile)
- concurrent:concurrent:jar:1.3.4 (compile)
- concurrent:concurrent:jar:1.3.4 (compile)
- javax.resource:javax.resource-api:jar:1.7.1 (compile)
- javax.transaction:javax.transaction-api:jar:1.3 (compile)
- javax.transaction:javax.transaction-api:jar:1.3 (compile)
- org.apache.ant:ant:jar:1.10.15 (compile)
- org.apache.ant:ant-launcher:jar:1.10.15 (compile)
- org.apache.ant:ant-launcher:jar:1.10.15 (compile)
- org.jfree:jfreechart:jar:1.5.5 (compile)
- org.apache.commons:commons-lang3:jar:3.14.0 (compile)
- org.apache.commons:commons-text:jar:1.13.0 (compile)
- commons-logging:commons-logging:jar:1.3.5 (compile)
- commons-logging:commons-logging-api:jar:1.1 (compile)
- org.apache.commons:commons-collections4:jar:4.4 (compile)
- org.apache.commons:commons-configuration2:jar:2.11.0 (compile)
- commons-io:commons-io:jar:2.18.0 (compile)
- commons-fileupload:commons-fileupload:jar:1.5 (compile)
- org.apache.commons:commons-pool2:jar:2.12.1 (compile)
- org.apache.commons:commons-compress:jar:1.27.1 (compile)
- commons-codec:commons-codec:jar:1.18.0 (compile)
- com.fasterxml.jackson.core:jackson-core:jar:2.18.2 (compile)
- com.fasterxml.jackson.core:jackson-annotations:jar:2.18.2 (compile)
- com.fasterxml.jackson.core:jackson-databind:jar:2.18.2 (compile)
- xml-apis:xml-apis:jar:1.4.01 (compile)
- xerces:xercesImpl:jar:2.12.2 (compile)
- org.apache.logging.log4j:log4j-core:jar:2.24.3 (compile)
- org.apache.logging.log4j:log4j-api:jar:2.24.3 (compile)
- org.apache.logging.log4j:log4j-api:jar:2.24.3 (compile)
- org.apache.logging.log4j:log4j-slf4j-impl:jar:2.24.3 (runtime)
- org.apache.logging.log4j:log4j-1.2-api:jar:2.24.3 (compile)
- org.apache.logging.log4j:log4j-jcl:jar:2.24.3 (compile)
- org.apache.logging.log4j:log4j-jul:jar:2.24.3 (compile)
- io.micrometer:micrometer-core:jar:1.13.6 (compile)
- io.micrometer:micrometer-commons:jar:1.13.6 (compile)
- io.micrometer:micrometer-observation:jar:1.13.6 (compile)
- org.hdrhistogram:HdrHistogram:jar:2.2.2 (runtime)
- org.latencyutils:LatencyUtils:jar:2.0.3 (runtime)
- io.micrometer:micrometer-commons:jar:1.13.6 (compile)
- io.micrometer:micrometer-registry-jmx:jar:1.13.6 (compile)
- io.dropwizard.metrics:metrics-jmx:jar:4.2.28 (compile)
- io.dropwizard.metrics:metrics-core:jar:4.2.28 (compile)
- io.dropwizard.metrics:metrics-core:jar:4.2.28 (compile)
- io.dropwizard.metrics:metrics-jmx:jar:4.2.28 (compile)
- org.springframework:spring-test:jar:3.2.18.RELEASE (test)
- junit:junit:jar:4.13.2 (test)
- org.hamcrest:hamcrest-core:jar:1.3 (test)
- org.hamcrest:hamcrest-core:jar:1.3 (test)
- io.takari.junit:takari-cpsuite:jar:1.2.7 (test)
- org.mockito:mockito-core:jar:5.15.2 (test)
- net.bytebuddy:byte-buddy:jar:1.15.11 (test)
- net.bytebuddy:byte-buddy-agent:jar:1.15.11 (test)
- org.objenesis:objenesis:jar:3.3 (test)
- net.bytebuddy:byte-buddy:jar:1.15.11 (test)
- org.assertj:assertj-core:jar:3.27.3 (test)
- com.h2database:h2:jar:2.3.232 (test)
- org.projectlombok:lombok:jar:1.18.36 (compile)
- com.google.code.findbugs:jsr305:jar:3.0.2 (compile)
- org.springframework.retry:spring-retry:jar:1.0.3.RELEASE (compile)
Licenses
Unnamed: JPA 2.0 API
Apache 2.0: Spring Retry
The BSD License: Fortran to Java ARPACK
Eclipse Public License 1.0: JUnit
The Eclipse Public License, Version 1.0: takari-cpsuite
MIT License: SLF4J API Module
Plexus: dom4j
GPL2 w/ CPE: jaxb-api
The GNU General Public License, v2 with Universal FOSS Exception, v1.0: MySQL Connector/J
New BSD License: Hamcrest Core
CDDL/GPLv2+CE: JavaBeans Activation Framework API jar, JavaMail API
Apache 2: JavaEWAH, Lucene Common Analyzers, Lucene Core, Lucene Facets, Lucene Highlighter, Lucene Memory, Lucene Queries, opencsv
Public domain, Sun Microsoystems: Dough Lea's util.concurrent package
BSD 3 Clause: all, core, native_ref-java, native_system-java, netlib-native_ref-linux-armhf, netlib-native_ref-linux-i686, netlib-native_ref-linux-x86_64, netlib-native_ref-osx-x86_64, netlib-native_ref-win-i686, netlib-native_ref-win-x86_64, netlib-native_system-linux-armhf, netlib-native_system-linux-i686, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, netlib-native_system-win-i686, netlib-native_system-win-x86_64
Unknown: JRI, JRIEngine, colt, jakarta-regexp, jboss-ejb3x
LGPL: JniLoader
Public Domain, per Creative Commons CC0: HdrHistogram, LatencyUtils
Apache License 2.0: JBoss Logging 3, JBoss Logging I18n Annotations, Javassist, Metrics Core, Metrics Integration with JMX, swagger-annotations
BSD License: AntLR Parser Generator
The MIT License: Project Lombok
Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)
Apache-2.0: Apache Commons CSV, Apache Commons Codec, Apache Commons Compress, Apache Commons Configuration, Apache Commons FileUpload, Apache Commons IO, Apache Commons Lang, Apache Commons Logging, Apache Commons Net, Apache Commons Pool, Apache Commons Text, Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Commons Logging Bridge, Apache Log4j Core, Apache Log4j JUL Adapter, Apache Velocity - Engine, AssertJ Core, SLF4J 1 Binding for Log4j API
Apache License, Version 2.0: Apache Commons Collections, Apache Commons Math, Apache POI - Common, Byte Buddy (without dependencies), Byte Buddy agent, Objenesis
GNU General Public License, Version 2 with the Classpath Exception: Java Transaction API
EPL 1.0: H2 Database Engine
MPL 1.1: Javassist
MPL 2.0: H2 Database Engine
CDDL 1.1: jaxb-api
The SAX License: XML Commons External Components XML APIs
Common Development and Distribution License: Java Transaction API
BSD-3-Clause: Protocol Buffers [Core]
BSD-2-Clause: HdrHistogram
LGPL v2.1: REngine Java interface to R
The W3C License: XML Commons External Components XML APIs
Public Domain: AOP alliance
GNU Lesser General Public License: A Hibernate O/RM Module, Hibernate Commons Annotations, Hibernate Search Analyzer Framework, Hibernate Search Engine, Hibernate Search ORM, Matrix Toolkits for Java
LGPL 2.1: Javassist
MIT: mockito-core
CDDL + GPLv2 with classpath exception: Java Servlet API, javax.resource API, javax.transaction API
Eclipse Public License - v 2.0: AspectJ Weaver
GNU Lesser General Public Licence: JFreeChart
The Apache Software License, Version 2.0: Apache Ant Core, Apache Ant Launcher, Apache Jena - Core, Apache Jena - IRI, Ehcache Core, FindBugs-jsr305, Gemma Core, HikariCP, Jackson-annotations, Jackson-core, SparseBitSet, Spring AOP, Spring Aspects, Spring Beans, Spring Context, Spring Context Support, Spring Core, Spring Expression Language (SpEL), Spring JDBC, Spring Object/Relational Mapping, Spring TestContext Framework, Spring Transaction, Spring Web, XML Commons External Components XML APIs, Xerces2-j, baseCode, gsec, jackson-databind, micrometer-commons, micrometer-core, micrometer-observation, micrometer-registry-jmx, spring-security-acl, spring-security-config, spring-security-core, spring-security-web
Dependency File Details
Filename | Size | Entries | Classes | Packages | Java Version | Debug Information | Sealed |
---|---|---|---|---|---|---|---|
JRI-0.5-0.jar | 71.8 kB | 15 | 9 | 1 | 1.4 | Yes | No |
JRIEngine-0.5-0.jar | 9.7 kB | 5 | 2 | 1 | 1.4 | Yes | No |
antlr-2.7.7.jar | 445.3 kB | 239 | 224 | 12 | 1.2 | Yes | No |
aopalliance-1.0.jar | 4.5 kB | 15 | 9 | 2 | 1.3 | Yes | No |
baseCode-1.1.24-SNAPSHOT.jar | 2.2 MB | 294 | 253 | 26 | 1.8 | Yes | No |
colt-1.2.0.jar | 581.9 kB | 623 | 593 | 24 | 1.2 | No | No |
jackson-annotations-2.18.2.jar | 78.5 kB | 87 | 74 | 2 | 1.6 | Yes | No |
jackson-core-2.18.2.jar | 597.8 kB | 293 | - | - | - | - | No |
• Root | - | 246 | 211 | 14 | 1.8 | Yes | - |
• Versioned | - | 2 | 1 | 1 | 9 | No | - |
• Versioned | - | 12 | 3 | 1 | 11 | Yes | - |
• Versioned | - | 11 | 2 | 1 | 17 | Yes | - |
• Versioned | - | 11 | 2 | 1 | 21 | Yes | - |
• Versioned | - | 11 | 2 | 1 | 22 | Yes | - |
jackson-databind-2.18.2.jar | 1.7 MB | 829 | - | - | - | - | No |
• Root | - | 827 | 789 | 23 | 1.8 | Yes | - |
• Versioned | - | 2 | 1 | 1 | 9 | No | - |
jniloader-1.1.jar | 8.7 kB | 13 | 2 | 1 | 1.6 | Yes | No |
all-1.1.2.pom | 4.3 kB | - | - | - | - | - | - |
core-1.1.2.jar | 164.4 kB | 17 | 6 | 1 | 1.6 | Yes | No |
native_ref-java-1.1.jar | 54.5 kB | 14 | 3 | 1 | 1.6 | Yes | No |
native_system-java-1.1.jar | 54.5 kB | 14 | 3 | 1 | 1.6 | Yes | No |
netlib-native_ref-linux-armhf-1.1-natives.jar | 1.2 MB | 8 | 0 | 0 | - | - | - |
netlib-native_ref-linux-i686-1.1-natives.jar | 1.5 MB | 8 | 0 | 0 | - | - | - |
netlib-native_ref-linux-x86_64-1.1-natives.jar | 1.7 MB | 8 | 0 | 0 | - | - | - |
netlib-native_ref-osx-x86_64-1.1-natives.jar | 1.8 MB | 11 | 0 | 0 | - | - | - |
netlib-native_ref-win-i686-1.1-natives.jar | 1.8 MB | 11 | 0 | 0 | - | - | - |
netlib-native_ref-win-x86_64-1.1-natives.jar | 2.3 MB | 11 | 0 | 0 | - | - | - |
netlib-native_system-linux-armhf-1.1-natives.jar | 310.9 kB | 11 | 0 | 0 | - | - | - |
netlib-native_system-linux-i686-1.1-natives.jar | 435.4 kB | 11 | 0 | 0 | - | - | - |
netlib-native_system-linux-x86_64-1.1-natives.jar | 458.6 kB | 11 | 0 | 0 | - | - | - |
netlib-native_system-osx-x86_64-1.1-natives.jar | 554 kB | 11 | 0 | 0 | - | - | - |
netlib-native_system-win-i686-1.1-natives.jar | 561.5 kB | 11 | 0 | 0 | - | - | - |
netlib-native_system-win-x86_64-1.1-natives.jar | 637.4 kB | 11 | 0 | 0 | - | - | - |
jsr305-3.0.2.jar | 19.9 kB | 46 | 35 | 3 | 1.5 | Yes | No |
protobuf-java-3.25.1.jar | 1.9 MB | 754 | 735 | 2 | 1.8 | Yes | No |
JavaEWAH-0.7.9.jar | 125.1 kB | 81 | 69 | 3 | 1.6 | Yes | No |
mtj-1.0.4.jar | 269 kB | 196 | 183 | 3 | 1.6 | Yes | No |
h2-2.3.232.jar | 2.7 MB | 1060 | - | - | - | - | No |
• Root | - | 1059 | 1054 | 58 | 11 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 21 | Yes | - |
mysql-connector-j-8.4.0.jar | 2.5 MB | 1132 | 1078 | 31 | 1.8 | Yes | No |
opencsv-5.10.jar | 241.8 kB | 196 | 157 | 15 | 1.8 | Yes | No |
javax.mail-1.6.2.jar | 659 kB | 375 | 340 | 14 | 1.7 | Yes | No |
HikariCP-5.1.0.jar | 161.8 kB | 93 | 76 | 9 | 11 | Yes | No |
SparseBitSet-1.3.jar | 25.8 kB | 25 | 15 | 1 | 1.6 | Yes | No |
commons-codec-1.18.0.jar | 373 kB | 262 | - | - | - | - | No |
• Root | - | 261 | 114 | 7 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-fileupload-1.5.jar | 74.1 kB | 74 | 56 | 6 | 1.6 | Yes | No |
commons-io-2.18.0.jar | 538.9 kB | 398 | - | - | - | - | No |
• Root | - | 397 | 370 | 15 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-logging-1.3.5.jar | 73.7 kB | 42 | - | - | - | - | No |
• Root | - | 41 | 27 | 2 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-logging-api-1.1.jar | 44.6 kB | 29 | 20 | 2 | 1.1 | Yes | No |
commons-net-3.11.1.jar | 325.4 kB | 230 | - | - | - | - | No |
• Root | - | 229 | 197 | 20 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
concurrent-1.3.4.jar | 189.3 kB | 230 | 221 | 2 | 1.1 | No | No |
metrics-core-4.2.28.jar | 132.5 kB | 115 | 105 | 1 | 1.8 | Yes | No |
metrics-jmx-4.2.28.jar | 21.8 kB | 30 | 19 | 1 | 1.8 | Yes | No |
micrometer-commons-1.13.6.jar | 47.5 kB | 50 | 36 | 6 | 1.8 | Yes | No |
micrometer-core-1.13.6.jar | 863.5 kB | 610 | - | - | - | - | No |
• Root | - | 589 | 526 | 44 | 1.8 | Yes | - |
• Versioned | - | 21 | 14 | 1 | 1.8 | Yes | - |
micrometer-observation-1.13.6.jar | 71.8 kB | 71 | 56 | 6 | 1.8 | Yes | No |
micrometer-registry-jmx-1.13.6.jar | 9.2 kB | 11 | 3 | 1 | 1.8 | Yes | No |
swagger-annotations-2.2.28.jar | 48.2 kB | 85 | 59 | 13 | 1.8 | Yes | No |
takari-cpsuite-1.2.7.jar | 22.5 kB | 32 | 20 | 1 | 1.7 | Yes | No |
jakarta-regexp-1.4.jar | 28.6 kB | 22 | 17 | 1 | 1.1 | No | No |
activation-1.1.jar | 63 kB | 50 | 38 | 3 | 1.4 | Yes | No |
javax.activation-api-1.2.0.jar | 56.7 kB | 41 | 31 | 1 | 1.5 | Yes | No |
javax.resource-api-1.7.1.jar | 69.9 kB | 111 | 89 | 6 | 1.7 | Yes | No |
javax.servlet-api-4.0.1.jar | 95.5 kB | 109 | 85 | 4 | 1.8 | Yes | No |
javax.transaction-api-1.3.jar | 28 kB | 30 | 19 | 1 | 1.7 | Yes | No |
jaxb-api-2.3.1.jar | 128.1 kB | 136 | - | - | - | - | No |
• Root | - | 131 | 111 | 7 | 1.8 | Yes | - |
• Versioned | - | 5 | 1 | 1 | 9 | No | - |
jboss-ejb3x-4.2.2.GA.jar | 20.4 kB | 48 | 41 | 4 | 1.5 | Yes | No |
junit-4.13.2.jar | 384.6 kB | 389 | 350 | 32 | 1.5 | Yes | No |
byte-buddy-1.15.11.jar | 8.5 MB | 5890 | - | - | - | - | No |
• Root | - | 2950 | 2897 | 38 | 1.5 | Yes | - |
• Versioned | - | 2940 | 2898 | 39 | 1.8 | Yes | - |
byte-buddy-agent-1.15.11.jar | 365.4 kB | 170 | - | - | - | - | No |
• Root | - | 91 | 72 | 2 | 1.5 | Yes | - |
• Versioned | - | 79 | 73 | 3 | 1.8 | Yes | - |
ehcache-core-2.4.3.jar | 1 MB | 801 | 732 | 57 | 1.5 | Yes | No |
arpack_combined_all-0.1.jar | 1.2 MB | 926 | 915 | 6 | 1.4 | Yes | No |
org.geneontology-1.002.jar | 307.3 kB | 276 | 256 | 14 | 1.4 | Yes | Yes |
ant-1.10.15.jar | 2.3 MB | 1255 | 1171 | 62 | 1.8 | Yes | No |
ant-launcher-1.10.15.jar | 18.9 kB | 14 | 4 | 1 | 1.8 | Yes | No |
commons-collections4-4.4.jar | 751.9 kB | 555 | 524 | 19 | 1.8 | Yes | No |
commons-compress-1.27.1.jar | 1.1 MB | 625 | - | - | - | - | No |
• Root | - | 624 | 572 | 36 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-configuration2-2.11.0.jar | 664.7 kB | 421 | - | - | - | - | No |
• Root | - | 420 | 388 | 18 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-csv-1.13.0.jar | 59.3 kB | 34 | - | - | - | - | No |
• Root | - | 33 | 20 | 1 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-lang3-3.14.0.jar | 658 kB | 436 | - | - | - | - | No |
• Root | - | 434 | 403 | 18 | 1.8 | Yes | - |
• Versioned | - | 2 | 1 | 1 | 9 | No | - |
commons-math3-3.6.1.jar | 2.2 MB | 1402 | 1301 | 75 | 1.5 | Yes | No |
commons-pool2-2.12.1.jar | 152.3 kB | 98 | - | - | - | - | No |
• Root | - | 97 | 82 | 3 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
commons-text-1.13.0.jar | 257.9 kB | 185 | - | - | - | - | No |
• Root | - | 184 | 164 | 8 | 1.8 | Yes | - |
• Versioned | - | 1 | 1 | 1 | 9 | No | - |
jena-core-2.13.0.jar | 1.5 MB | 1167 | 1086 | 40 | 1.7 | Yes | No |
jena-iri-1.1.2.jar | 137.7 kB | 75 | 60 | 2 | 1.7 | Yes | No |
log4j-1.2-api-2.24.3.jar | 356.4 kB | 252 | 208 | 22 | 1.8 | Yes | No |
log4j-api-2.24.3.jar | 348.5 kB | 247 | - | - | - | - | No |
• Root | - | 236 | 209 | 11 | 1.8 | Yes | - |
• Versioned | - | 11 | 4 | 2 | 9 | Yes | - |
log4j-core-2.24.3.jar | 1.9 MB | 1320 | - | - | - | - | No |
• Root | - | 1303 | 1214 | 57 | 1.8 | Yes | - |
• Versioned | - | 17 | 7 | 4 | 9 | Yes | - |
log4j-jcl-2.24.3.jar | 13 kB | 22 | 5 | 2 | 1.8 | Yes | No |
log4j-jul-2.24.3.jar | 31.1 kB | 31 | 16 | 2 | 1.8 | Yes | No |
log4j-slf4j-impl-2.24.3.jar | 25.3 kB | 31 | 14 | 4 | 1.8 | Yes | No |
lucene-analyzers-3.6.2.jar | 1.2 MB | 396 | 302 | 52 | 1.5 | Yes | No |
lucene-core-3.6.2.jar | 1.5 MB | 997 | 973 | 18 | 1.5 | Yes | No |
lucene-facet-3.6.2.jar | 295.7 kB | 264 | 231 | 26 | 1.5 | Yes | No |
lucene-highlighter-3.6.2.jar | 89.2 kB | 64 | 54 | 2 | 1.5 | Yes | No |
lucene-memory-3.6.2.jar | 29.8 kB | 19 | 10 | 1 | 1.5 | Yes | No |
lucene-queries-3.6.2.jar | 47.4 kB | 36 | 26 | 3 | 1.5 | Yes | No |
poi-5.4.0.jar | 3 MB | 1772 | - | - | - | - | No |
• Root | - | 1770 | 1687 | 64 | 1.8 | Yes | - |
• Versioned | - | 2 | 1 | 1 | 9 | No | - |
velocity-engine-core-2.4.1.jar | 515.7 kB | 289 | 255 | 18 | 1.8 | Yes | No |
aspectjweaver-1.9.22.1.jar | 2.2 MB | 1056 | 1002 | 37 | 1.8 | Yes | No |
assertj-core-3.27.3.jar | 1.4 MB | 881 | - | - | - | - | No |
• Root | - | 877 | 838 | 27 | 1.8 | Yes | - |
• Versioned | - | 4 | 1 | 1 | 9 | No | - |
dom4j-2.1.4.jar | 324.7 kB | 201 | 184 | 14 | 1.8 | Yes | No |
hamcrest-core-1.3.jar | 45 kB | 52 | 45 | 3 | 1.5 | Yes | No |
jarhdf5-1.12.3.jar | 86.8 kB | 77 | 71 | 4 | 11 | Yes | No |
HdrHistogram-2.2.2.jar | 177.2 kB | 108 | 97 | 2 | 1.8 | Yes | No |
hibernate-core-4.2.21.Final.jar | 4.7 MB | 3234 | 3024 | 171 | 1.6 | Yes | No |
hibernate-ehcache-4.2.21.Final.jar | 138.4 kB | 71 | 58 | 6 | 1.6 | Yes | No |
hibernate-search-analyzers-4.4.6.Final.jar | 2.4 kB | 7 | 0 | 0 | - | - | - |
hibernate-search-engine-4.4.6.Final.jar | 939.2 kB | 826 | 696 | 71 | 1.6 | Yes | No |
hibernate-search-orm-4.4.6.Final.jar | 127.2 kB | 105 | 69 | 15 | 1.6 | Yes | No |
hibernate-commons-annotations-4.0.5.Final.jar | 75.3 kB | 79 | 67 | 7 | 1.6 | Yes | No |
hibernate-jpa-2.0-api-1.0.1.Final.jar | 102.7 kB | 190 | 176 | 4 | 1.5 | Yes | No |
javassist-3.30.2-GA.jar | 794.7 kB | 450 | 426 | 17 | 1.8 | Yes | No |
jboss-logging-3.6.1.Final.jar | 61.9 kB | 46 | 35 | 2 | 11 | Yes | No |
jboss-logging-annotations-3.0.4.Final.jar | 17.5 kB | 39 | 27 | 2 | 11 | Yes | No |
jboss-transaction-api_1.1_spec-1.0.1.Final.jar | 25.2 kB | 31 | 18 | 2 | 1.6 | Yes | No |
jfreechart-1.5.5.jar | 1.7 MB | 787 | 692 | 41 | 1.8 | Yes | No |
LatencyUtils-2.0.3.jar | 29.8 kB | 31 | 22 | 1 | 1.6 | Yes | No |
mockito-core-5.15.2.jar | 710 kB | 647 | 575 | 64 | 11 | Yes | No |
objenesis-3.3.jar | 49.4 kB | 59 | 43 | 10 | 1.8 | Yes | No |
lombok-1.18.36.jar | 2.1 MB | 1083 | 178 | 13 | 1.6 | Yes | No |
REngine-2.1.0.jar | 39 kB | 43 | 33 | 1 | 1.4 | Yes | No |
slf4j-api-1.7.36.jar | 41.1 kB | 46 | 34 | 4 | 1.5 | Yes | No |
spring-aop-3.2.18.RELEASE.jar | 339.1 kB | 282 | 252 | 15 | 1.5 | Yes | No |
spring-aspects-3.2.18.RELEASE.jar | 51.4 kB | 55 | 30 | 7 | 1.5 | Yes | No |
spring-beans-3.2.18.RELEASE.jar | 614.4 kB | 401 | 358 | 14 | 1.5 | Yes | No |
spring-context-3.2.18.RELEASE.jar | 868.2 kB | 737 | 633 | 67 | 1.5 | Yes | No |
spring-context-support-3.2.18.RELEASE.jar | 128.8 kB | 97 | 76 | 10 | 1.5 | Yes | No |
spring-core-3.2.18.RELEASE.jar | 885.6 kB | 686 | 648 | 32 | 1.5 | Yes | No |
spring-expression-3.2.18.RELEASE.jar | 196.3 kB | 140 | 128 | 6 | 1.5 | Yes | No |
spring-jdbc-3.2.18.RELEASE.jar | 406.1 kB | 328 | 296 | 18 | 1.5 | Yes | No |
spring-orm-3.2.18.RELEASE.jar | 385 kB | 296 | 276 | 14 | 1.5 | Yes | No |
spring-test-3.2.18.RELEASE.jar | 458.3 kB | 369 | 335 | 27 | 1.5 | Yes | No |
spring-tx-3.2.18.RELEASE.jar | 242.6 kB | 233 | 197 | 20 | 1.5 | Yes | No |
spring-web-3.2.18.RELEASE.jar | 631.4 kB | 490 | 442 | 35 | 1.5 | Yes | No |
spring-retry-1.0.3.RELEASE.jar | 80.9 kB | 100 | 81 | 10 | 1.5 | Yes | No |
spring-security-acl-3.2.10.RELEASE.jar | 82.8 kB | 78 | 62 | 5 | 1.5 | Yes | No |
spring-security-config-3.2.10.RELEASE.jar | 404.8 kB | 199 | 156 | 22 | 1.5 | Yes | No |
spring-security-core-3.2.10.RELEASE.jar | 369.6 kB | 370 | 306 | 43 | 1.5 | Yes | No |
spring-security-web-3.2.10.RELEASE.jar | 347 kB | 300 | 257 | 34 | 1.5 | Yes | No |
gemma-gsec-0.0.17.jar | 111.7 kB | 91 | 66 | 9 | 1.8 | Yes | No |
xercesImpl-2.12.2.jar | 1.4 MB | 1045 | 962 | 40 | 1.7 | No | No |
xml-apis-1.4.01.jar | 220.5 kB | 391 | 346 | 29 | 1.1 | No | No |
Total | Size | Entries | Classes | Packages | Java Version | Debug Information | Sealed |
135 | 86.1 MB | 46651 | 38698 | 2091 | 11 | 116 | 1 |
compile: 104 | compile: 66.8 MB | compile: 33937 | compile: 29725 | compile: 1628 | 11 | compile: 85 | compile: 1 |
runtime: 17 | runtime: 3.6 MB | runtime: 2189 | runtime: 1889 | runtime: 124 | runtime: 17 | - | |
system: 1 | system: 86.8 kB | system: 77 | system: 71 | system: 4 | system: 1 | - | |
test: 13 | test: 15.6 MB | test: 10448 | test: 7013 | test: 335 | 11 | test: 13 | - |