Package ubic.gemma.core.visualization

Interface ExperimentalDesignVisualizationService

All Known Implementing Classes:

ExperimentalDesignVisualizationServiceImpl

public interface ExperimentalDesignVisualizationService

Author:

Paul

Method Summary

Modifier and Type	Method	Description
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, ExperimentalFactor primaryFactor)	Put data vectors in the order you'd want to display the experimental design.

Method Detail

sortVectorDataByDesign

Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>> sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs,
                                                                                                                               @Nullable
                                                                                                                               ExperimentalFactor primaryFactor)

Put data vectors in the order you'd want to display the experimental design. This causes the "isReorganized" flag of the dedVs to be set to true.

Parameters:

dedVs - dedVs, already sliced for the subset of samples needed for display (if necessary); will be modified

primaryFactor - if non-null this factor will be used to order the data, otherwise the first factor will be chosen using built-in heuristics. Set this to ensure that the data is ordered by the factor you want as in the case of showing DE genes

Returns:

Map of EE ids to "layouts", which are Maps of BioAssays to map of experimental factors to doubles.