Package ubic.gemma.web.controller.coexpressionSearch

Class CoexpressionSearchController

java.lang.Object

ubic.gemma.web.controller.coexpressionSearch.CoexpressionSearchController

@Controller
public class CoexpressionSearchController
extends Object

Author:

luke, paul

Constructor Summary

Constructors

Constructor	Description
CoexpressionSearchController()

Method Summary

Modifier and Type	Method	Description
String	doBackgroundCoexSearch(CoexpressionSearchCommand searchOptions)	Used by CoexpressionSearchData.js - the main home page coexpression search.
CoexpressionMetaValueObject	doSearch(CoexpressionSearchCommand searchOptions)	Important entry point - called by the CoexpressionSearchTask
CoexpressionMetaValueObject	doSearchQuickComplete(CoexpressionSearchCommand searchOptions, Collection<Long> queryGeneIds)	Do a search that fills in the edges among the genes already found.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoexpressionSearchController

public CoexpressionSearchController()

Method Detail

doBackgroundCoexSearch

public String doBackgroundCoexSearch(CoexpressionSearchCommand searchOptions)

Used by CoexpressionSearchData.js - the main home page coexpression search.

Parameters:

searchOptions - search options

Returns:

string

doSearch

public CoexpressionMetaValueObject doSearch(CoexpressionSearchCommand searchOptions)

Important entry point - called by the CoexpressionSearchTask

Parameters:

searchOptions - search options

Returns:

coexp. meta VO

doSearchQuickComplete

public CoexpressionMetaValueObject doSearchQuickComplete(CoexpressionSearchCommand searchOptions,
                                                         Collection<Long> queryGeneIds)

Do a search that fills in the edges among the genes already found. Maps to doSearchQuickComplete in javascript.

Parameters:

searchOptions - search options

queryGeneIds - the genes which were used originally to start the search

Returns:

coexp meta VO