Package ubic.gemma.persistence.service.expression.bioAssayData

Class ProcessedExpressionDataVectorDaoTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseDatabaseTest

ubic.gemma.persistence.service.expression.bioAssayData.ProcessedExpressionDataVectorDaoTest

All Implemented Interfaces:

Aware, ApplicationContextAware

@ContextConfiguration
@TestExecutionListeners(WithSecurityContextTestExecutionListener.class)
public class ProcessedExpressionDataVectorDaoTest
extends BaseDatabaseTest

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

BaseDatabaseTest.BaseDatabaseTestContextConfiguration, BaseDatabaseTest.DataSourceInitializer

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

aclService, sessionFactory

Fields inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

jdbcTemplate, simpleJdbcTemplate

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
ProcessedExpressionDataVectorDaoTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testCreateProcessedDataVectors()
void	testCreateProcessedDataVectorsFromLog2Data()
void	testCreateProcessedDataVectorsFromLog2RatiometricData()
void	testGetProcessedVectors()
void	testThaw()

Methods inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

flushAndClearSession

Methods inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

countRowsInTable, countRowsInTableWhere, deleteFromTables, dropTables, executeSqlScript, setDataSource, setSqlScriptEncoding

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProcessedExpressionDataVectorDaoTest

public ProcessedExpressionDataVectorDaoTest()

Method Detail

setUp

public void setUp()

testCreateProcessedDataVectors

@WithMockUser
public void testCreateProcessedDataVectors()
                                    throws QuantitationMismatchException

Throws:

QuantitationMismatchException

testCreateProcessedDataVectorsFromLog2Data

@WithMockUser
public void testCreateProcessedDataVectorsFromLog2Data()
                                                throws QuantitationMismatchException

Throws:

QuantitationMismatchException

testCreateProcessedDataVectorsFromLog2RatiometricData

@WithMockUser
public void testCreateProcessedDataVectorsFromLog2RatiometricData()
                                                           throws QuantitationMismatchException

Throws:

QuantitationMismatchException

testThaw

@WithMockUser
public void testThaw()
              throws QuantitationMismatchException

Throws:

QuantitationMismatchException

testGetProcessedVectors

public void testGetProcessedVectors()