Class DifferentialExpressionAnalysisValueObject
- java.lang.Object
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- ubic.gemma.model.common.IdentifiableValueObject<T>
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- ubic.gemma.model.analysis.AnalysisValueObject<DifferentialExpressionAnalysis>
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- ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisValueObject
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- All Implemented Interfaces:
Serializable
,Identifiable
public class DifferentialExpressionAnalysisValueObject extends AnalysisValueObject<DifferentialExpressionAnalysis> implements Serializable
Summary of a differential expression analysis- Author:
- paul
- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description static double
DEFAULT_THRESHOLD
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Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject
id
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Constructor Summary
Constructors Constructor Description DifferentialExpressionAnalysisValueObject()
DifferentialExpressionAnalysisValueObject(DifferentialExpressionAnalysis analysis)
Does not populate the resultSets.
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Method Summary
All Methods Instance Methods Concrete Methods Deprecated Methods Modifier and Type Method Description Map<Long,Collection<FactorValueValueObject>>
getFactorValuesUsed()
Deprecated.This was renamed for clarity.Map<Long,Collection<FactorValueValueObject>>
getFactorValuesUsedByExperimentalFactorId()
Produce a mapping ofExperimentalFactor
IDs toFactorValue
VOs used in this analysis.boolean
isSubset()
String
toString()
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Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject
getId, setId
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Field Detail
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DEFAULT_THRESHOLD
public static final double DEFAULT_THRESHOLD
- See Also:
- Constant Field Values
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Constructor Detail
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DifferentialExpressionAnalysisValueObject
public DifferentialExpressionAnalysisValueObject()
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DifferentialExpressionAnalysisValueObject
public DifferentialExpressionAnalysisValueObject(DifferentialExpressionAnalysis analysis)
Does not populate the resultSets.- Parameters:
analysis
- the analysis to read the values from
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Method Detail
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getFactorValuesUsed
@Deprecated public Map<Long,Collection<FactorValueValueObject>> getFactorValuesUsed()
Deprecated.This was renamed for clarity.
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getFactorValuesUsedByExperimentalFactorId
public Map<Long,Collection<FactorValueValueObject>> getFactorValuesUsedByExperimentalFactorId()
Produce a mapping ofExperimentalFactor
IDs toFactorValue
VOs used in this analysis.If this is a NOT a subset analysis, then this won't be important (so it may not be populated), but for subset analyses (subsetFactor != null), only the factor values present in the subset are relevant.
This can be null in certain cases if set to NULL via
#setFactorValuesUsed(Map)
so that it does not appear in the JSON serialization, but you can assume it is non-null.
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isSubset
public boolean isSubset()
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toString
public String toString()
- Overrides:
toString
in classIdentifiableValueObject<DifferentialExpressionAnalysis>
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