TwoChannelMissingValuesTest (Gemma 1.31.7-SNAPSHOT Test API)

java.lang.Object
- org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
- - ubic.gemma.core.util.test.BaseIntegrationTest
  - - ubic.gemma.core.util.test.BaseSpringContextTest
    - - ubic.gemma.core.analysis.preprocess.TwoChannelMissingValuesTest

All Implemented Interfaces:: Aware, ApplicationContextAware

public class TwoChannelMissingValuesTest
extends BaseSpringContextTest

Author:: pavlidis

Field Summary
- Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
  externalDatabaseService, log, persisterHelper, rule, taxonService, testHelper
- Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
  applicationContext, logger

Constructor Summary

Constructors
Constructor Description

TwoChannelMissingValuesTest()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`testMissingValue()`
`void`	`testMissingValueGSE11017()`	Was giving all missing values.
`void`	`testMissingValueGSE523()`
`void`	`testMissingValueGSE56()`	GSE56 is corrupt: there is no Channel 1 signal value in the data file.

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class ubic.gemma.core.util.test.BaseIntegrationTest
setUpAuthentication, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
setApplicationContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- TwoChannelMissingValuesTest
```
public TwoChannelMissingValuesTest()
```

Method Detail

testMissingValue

public void testMissingValue()
                      throws Exception

Throws:: Exception

testMissingValueGSE523

public final void testMissingValueGSE523()
                                  throws Exception

Throws:: Exception

testMissingValueGSE11017

public void testMissingValueGSE11017()
                              throws Exception

Was giving all missing values.

Throws:: Exception

testMissingValueGSE56
```
public void testMissingValueGSE56()
                           throws Exception
```
GSE56 is corrupt: there is no Channel 1 signal value in the data file.

Throws:

Exception