Package ubic.gemma.web.services

Class GeneIDbyTaxonEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.GeneIDbyTaxonEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class GeneIDbyTaxonEndpoint
extends AbstractGemmaEndpoint

Given the Taxon (eg. "1" for Homo Sapiens), will return all the Gene IDs that match the taxon.

Author:

klc, gavin

Field Summary

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
GeneIDbyTaxonEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends the response back.
void	setGeneService(GeneService gs)	Sets the "business service" to delegate to.
void	setTaxonService(TaxonService taxonService)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneIDbyTaxonEndpoint

public GeneIDbyTaxonEndpoint()

Method Detail

setGeneService

public void setGeneService(GeneService gs)

Sets the "business service" to delegate to.

setTaxonService

public void setTaxonService(TaxonService taxonService)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element