Class BlatResultValueObject
- java.lang.Object
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- ubic.gemma.model.common.IdentifiableValueObject<BlatResult>
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- ubic.gemma.model.genome.sequenceAnalysis.BlatResultValueObject
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- All Implemented Interfaces:
Serializable
,Identifiable
public class BlatResultValueObject extends IdentifiableValueObject<BlatResult>
- Author:
- paul
- See Also:
- Serialized Form
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Field Summary
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Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject
id
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Constructor Summary
Constructors Constructor Description BlatResultValueObject()
Required when using the class as a spring bean.BlatResultValueObject(Long id)
BlatResultValueObject(Long id, TaxonValueObject taxon, Integer blockCount, String blockSizes, Integer matches, Integer mismatches, Integer ns, Integer queryEnd, Integer queryGapBases, Integer queryGapCount, BioSequenceValueObject querySequence, Integer queryStart, String queryStarts, Integer repMatches, Double score, Double identity, String strand, String targetChromosomeName, String targetDatabase, Long targetEnd, Integer targetGapBases, Integer targetGapCount, Long targetStart, String targetStarts)
BlatResultValueObject(BlatResult br)
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Method Summary
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Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject
getId, setId, toString
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Constructor Detail
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BlatResultValueObject
public BlatResultValueObject()
Required when using the class as a spring bean.
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BlatResultValueObject
public BlatResultValueObject(Long id)
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BlatResultValueObject
public BlatResultValueObject(BlatResult br)
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BlatResultValueObject
public BlatResultValueObject(Long id, TaxonValueObject taxon, Integer blockCount, String blockSizes, Integer matches, Integer mismatches, Integer ns, Integer queryEnd, Integer queryGapBases, Integer queryGapCount, BioSequenceValueObject querySequence, Integer queryStart, String queryStarts, Integer repMatches, Double score, Double identity, String strand, String targetChromosomeName, String targetDatabase, Long targetEnd, Integer targetGapBases, Integer targetGapCount, Long targetStart, String targetStarts)
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Method Detail
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getBlockCount
public Integer getBlockCount()
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setBlockCount
public void setBlockCount(Integer blockCount)
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getBlockSizes
public String getBlockSizes()
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setBlockSizes
public void setBlockSizes(String blockSizes)
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getIdentity
public Double getIdentity()
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setIdentity
public void setIdentity(Double identity)
- Parameters:
identity
- the identity to set (0-1)
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getMatches
public Integer getMatches()
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setMatches
public void setMatches(Integer matches)
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getMismatches
public Integer getMismatches()
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setMismatches
public void setMismatches(Integer mismatches)
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getNs
public Integer getNs()
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setNs
public void setNs(Integer ns)
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getQueryEnd
public Integer getQueryEnd()
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setQueryEnd
public void setQueryEnd(Integer queryEnd)
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getQueryGapBases
public Integer getQueryGapBases()
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setQueryGapBases
public void setQueryGapBases(Integer queryGapBases)
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getQueryGapCount
public Integer getQueryGapCount()
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setQueryGapCount
public void setQueryGapCount(Integer queryGapCount)
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getQuerySequence
public BioSequenceValueObject getQuerySequence()
- Returns:
- the querySequence
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setQuerySequence
public void setQuerySequence(BioSequenceValueObject querySequence)
- Parameters:
querySequence
- the querySequence to set
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getQueryStart
public Integer getQueryStart()
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setQueryStart
public void setQueryStart(Integer queryStart)
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getQueryStarts
public String getQueryStarts()
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setQueryStarts
public void setQueryStarts(String queryStarts)
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getRepMatches
public Integer getRepMatches()
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setRepMatches
public void setRepMatches(Integer repMatches)
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getScore
public Double getScore()
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setScore
public void setScore(Double score)
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getStrand
public String getStrand()
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setStrand
public void setStrand(String strand)
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getTargetChromosomeName
public String getTargetChromosomeName()
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setTargetChromosomeName
public void setTargetChromosomeName(String targetChromosomeName)
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getTargetDatabase
public String getTargetDatabase()
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setTargetDatabase
public void setTargetDatabase(String targetDatabase)
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getTargetEnd
public Long getTargetEnd()
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setTargetEnd
public void setTargetEnd(Long targetEnd)
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getTargetGapBases
public Integer getTargetGapBases()
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setTargetGapBases
public void setTargetGapBases(Integer targetGapBases)
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getTargetGapCount
public Integer getTargetGapCount()
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setTargetGapCount
public void setTargetGapCount(Integer targetGapCount)
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getTargetStart
public Long getTargetStart()
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setTargetStart
public void setTargetStart(Long targetStart)
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getTargetStarts
public String getTargetStarts()
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setTargetStarts
public void setTargetStarts(String targetStarts)
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getTaxon
public TaxonValueObject getTaxon()
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setTaxon
public void setTaxon(TaxonValueObject taxon)
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